Started by upstream project "BIOFORMATS-test-repo" build number 286 originally caused by: Started by upstream project "Trigger" build number 305 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins12911350051616389568.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45104_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:21:26,534 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:26,536 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:21:26,536 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:26,537 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:26,537 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:26,538 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:26,538 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:26,538 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:26,538 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:26,539 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:26,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:26,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:26,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:26,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:26,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:26,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:26,751 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:26,751 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:26,751 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:26,752 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:26,752 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:21:26,753 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:21:26,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 215 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-10 00:21:26,762] [main] java.version = 11.0.16 [testng] 00:21:26,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:26,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:26,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-10_00-21-26.log] [testng] 00:21:26,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-12-10 00:21:26,815] [main] testng.directory = /data [testng] [2024-12-10 00:21:26,815] [main] testng.configDirectory = /config [testng] [2024-12-10 00:21:26,825] [main] testng.multiplier = 1.0 [testng] [2024-12-10 00:21:26,827] [main] testng.in-memory = false [testng] [2024-12-10 00:21:26,827] [main] testng.allow-missing = false [testng] [2024-12-10 00:21:26,827] [main] user.language = en [testng] [2024-12-10 00:21:26,827] [main] user.country = ${user.country} [testng] [2024-12-10 00:21:26,827] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-10 00:21:46,582] [main] ---------------------------------------- [testng] [2024-12-10 00:21:46,582] [main] Total files: 315 [testng] [2024-12-10 00:21:46,583] [main] Scan time: 19.755 s (62 ms/file) [testng] [2024-12-10 00:21:46,583] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-10 00:34:44,646] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] 00:34:44,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:34:44,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:44,650 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-10_00-34-44.log] [testng] 00:34:44,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@209106de - End of configuration. [testng] [2024-12-10 00:34:45,519] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] 00:34:45,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:34:45,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:45,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-10_00-34-45.log] [testng] 00:34:45,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76a512ea - End of configuration. [testng] [2024-12-10 00:34:46,302] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] 00:34:46,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:34:46,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:46,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-10_00-34-46.log] [testng] 00:34:46,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dc0fe41 - End of configuration. [testng] [2024-12-10 00:34:46,754] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] 00:34:46,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:34:46,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:46,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-10_00-34-46.log] [testng] 00:34:46,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63c2bb35 - End of configuration. [testng] [2024-12-10 00:34:47,526] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] 00:34:47,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:34:47,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:47,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-10_00-34-47.log] [testng] 00:34:47,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32b5cd2b - End of configuration. [testng] [2024-12-10 00:34:47,944] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif: [testng] 00:34:47,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:34:47,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:47,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-10_00-34-47.log] [testng] 00:34:47,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fb278b6 - End of configuration. [testng] [2024-12-10 00:34:48,768] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] 00:34:48,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:34:48,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:48,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-10_00-34-48.log] [testng] 00:34:48,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@588f54b4 - End of configuration. [testng] [2024-12-10 00:34:50,042] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] 00:34:50,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:34:50,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:50,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-10_00-34-50.log] [testng] 00:34:50,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c6761e8 - End of configuration. [testng] [2024-12-10 00:34:51,142] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] 00:34:51,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:34:51,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:51,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-10_00-34-51.log] [testng] 00:34:51,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7956c2e5 - End of configuration. [testng] [2024-12-10 00:34:51,675] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] 00:34:51,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:34:51,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:51,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-10_00-34-51.log] [testng] 00:34:51,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d522528 - End of configuration. [testng] [2024-12-10 00:34:52,546] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] 00:34:52,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:34:52,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:52,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-10_00-34-52.log] [testng] 00:34:52,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@701bbf20 - End of configuration. [testng] [2024-12-10 00:34:53,757] [pool-1-thread-2] Initializing /data/qa-17270/image1.oir: [testng] 00:34:53,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:34:53,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:53,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-10_00-34-53.log] [testng] 00:34:53,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a524b4a - End of configuration. [testng] [2024-12-10 00:35:00,435] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-12-10 00:35:02,743] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-12-10 00:35:03,544] [pool-1-thread-8] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-12-10 00:35:04,754] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-12-10 00:35:08,161] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-12-10 00:35:11,164] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-12-10 00:35:12,973] [pool-1-thread-3] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-12-10 00:35:13,019] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-12-10 00:35:13,672] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-12-10 00:35:15,591] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-12-10 00:35:20,722] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-12-10 00:35:22,754] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-12-10 00:35:24,508] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-12-10 00:35:25,433] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-10 00:35:26,375] [pool-1-thread-7] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-12-10 00:35:27,974] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-12-10 00:35:28,776] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-12-10 00:35:32,657] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-12-10 00:35:35,310] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-12-10 00:35:36,808] [pool-1-thread-5] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-12-10 00:35:39,414] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-12-10 00:35:40,912] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-12-10 00:35:41,972] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-12-10 00:35:42,684] [pool-1-thread-9] Initializing /data/olympus/XYZt.oir: [testng] [2024-12-10 00:35:51,065] [pool-1-thread-11] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-12-10 00:35:52,201] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-12-10 00:35:54,787] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-12-10 00:35:56,560] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-12-10 00:35:58,986] [pool-1-thread-1] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-12-10 00:36:03,529] [pool-1-thread-11] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-12-10 00:36:06,830] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-12-10 00:36:07,768] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-12-10 00:36:10,983] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-12-10 00:36:13,114] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-12-10 00:36:14,195] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-12-10 00:36:19,099] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-12-10 00:36:21,370] [pool-1-thread-9] Initializing /data/olympus/XYZt.vsi: [testng] [2024-12-10 00:36:22,974] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-12-10 00:36:24,051] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-12-10 00:36:26,419] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-12-10 00:36:29,551] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-12-10 00:36:34,113] [pool-1-thread-4] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-12-10 00:36:56,504] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-12-10 00:36:58,843] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-12-10 00:37:00,852] [pool-1-thread-11] Initializing /data/qa-17917/f10010.oir: [testng] [2024-12-10 00:37:29,267] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-12-10 00:37:33,747] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-12-10 00:37:36,076] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-12-10 00:37:39,396] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-12-10 00:37:39,965] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-12-10 00:37:41,227] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-12-10 00:37:44,241] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-12-10 00:37:45,776] [pool-1-thread-8] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-12-10 00:37:47,030] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-12-10 00:37:47,655] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-10 00:37:48,230] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-12-10 00:37:49,467] [pool-1-thread-1] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-12-10 00:37:53,048] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-12-10 00:37:54,431] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-12-10 00:37:56,984] [pool-1-thread-7] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-12-10 00:37:59,917] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-12-10 00:38:01,086] [pool-1-thread-6] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-12-10 00:38:04,551] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-12-10 00:38:08,399] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-12-10 00:38:11,950] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-12-10 00:38:13,376] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-12-10 00:38:13,952] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-12-10 00:38:15,399] [pool-1-thread-10] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-12-10 00:38:17,840] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-12-10 00:38:22,511] [pool-1-thread-7] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-12-10 00:38:25,154] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-12-10 00:38:26,538] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-12-10 00:38:27,668] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-12-10 00:38:28,613] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-12-10 00:38:29,437] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-12-10 00:38:33,650] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-12-10 00:38:36,744] [pool-1-thread-6] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-12-10 00:38:37,464] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-12-10 00:38:38,146] [pool-1-thread-5] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-12-10 00:38:38,714] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-12-10 00:38:39,113] [pool-1-thread-10] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-12-10 00:38:44,763] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-10 00:38:45,817] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-12-10 00:38:46,501] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-12-10 00:38:48,654] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-12-10 00:38:53,834] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-12-10 00:38:54,375] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-12-10 00:38:55,328] [pool-1-thread-5] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-12-10 00:39:00,629] [pool-1-thread-5] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-12-10 00:39:02,419] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-12-10 00:39:03,471] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-12-10 00:39:06,365] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-12-10 00:39:07,279] [pool-1-thread-5] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-12-10 00:40:00,349] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-12-10 00:40:00,987] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-12-10 00:40:05,311] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-12-10 00:40:06,891] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-12-10 00:40:07,814] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-12-10 00:40:14,028] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-12-10 00:40:18,277] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-12-10 00:40:19,864] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-12-10 00:40:20,898] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-12-10 00:40:25,222] [pool-1-thread-10] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-12-10 00:40:27,991] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-12-10 00:40:32,630] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-12-10 00:40:33,174] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-12-10 00:40:33,706] [pool-1-thread-1] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-12-10 00:40:39,340] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-12-10 00:40:40,127] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-12-10 00:40:43,363] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-12-10 00:40:44,200] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-12-10 00:40:44,647] [pool-1-thread-1] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-12-10 00:40:49,699] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-12-10 00:40:50,154] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-12-10 00:40:50,795] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-12-10 00:40:51,393] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-12-10 00:40:54,667] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-12-10 00:40:57,132] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-12-10 00:40:57,628] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-12-10 00:40:58,142] [pool-1-thread-2] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-12-10 00:40:59,026] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-12-10 00:41:03,705] [pool-1-thread-10] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-12-10 00:41:06,248] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-12-10 00:41:07,179] [pool-1-thread-7] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-12-10 00:41:07,780] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-12-10 00:41:08,206] [pool-1-thread-2] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-12-10 00:41:12,999] [pool-1-thread-7] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-12-10 00:41:13,478] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-12-10 00:41:13,967] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-12-10 00:41:15,073] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-12-10 00:41:19,392] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-12-10 00:41:20,336] [pool-1-thread-10] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-12-10 00:41:20,749] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-12-10 00:41:21,338] [pool-1-thread-1] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-12-10 00:41:22,159] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-12-10 00:41:26,163] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-12-10 00:41:28,597] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-12-10 00:41:31,608] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-12-10 00:41:34,398] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-12-10 00:41:35,316] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-12-10 00:41:36,292] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-12-10 00:41:37,527] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-12-10 00:41:39,113] [pool-1-thread-7] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-12-10 00:41:47,113] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-12-10 00:41:47,798] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-12-10 00:41:48,266] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-12-10 00:41:49,188] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-12-10 00:41:49,823] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-12-10 00:41:53,675] [pool-1-thread-9] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-12-10 00:41:58,049] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-12-10 00:41:59,017] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-12-10 00:41:59,929] [pool-1-thread-10] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-12-10 00:42:00,543] [pool-1-thread-3] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-12-10 00:42:02,139] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-12-10 00:42:03,332] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-12-10 00:42:05,929] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-12-10 00:42:10,524] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-12-10 00:42:20,063] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-12-10 00:42:21,832] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-12-10 00:42:22,585] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-12-10 00:42:24,111] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-12-10 00:42:26,138] [pool-1-thread-10] Initializing /data/qa-17270/stack1.oir: [testng] [2024-12-10 00:42:29,003] [pool-1-thread-2] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-12-10 00:42:29,839] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-12-10 00:42:30,572] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-12-10 00:42:32,032] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-12-10 00:42:34,912] [pool-1-thread-9] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-12-10 00:42:40,575] [pool-1-thread-1] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-12-10 00:42:42,335] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-12-10 00:42:45,388] [pool-1-thread-11] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-12-10 00:42:46,873] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-12-10 00:42:48,542] [pool-1-thread-2] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-12-10 00:42:51,636] [pool-1-thread-1] Initializing /data/qa-17335/1.oir: [testng] [2024-12-10 00:42:51,969] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-12-10 00:42:53,966] [pool-1-thread-4] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-12-10 00:42:55,720] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-12-10 00:43:01,577] [pool-1-thread-2] Initializing /data/qa-17919/f10187.oir: [testng] [2024-12-10 00:43:21,268] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-12-10 00:43:27,569] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-12-10 00:43:32,147] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir: time="2024-12-10T01:00:28Z" level=error msg="error waiting for container: unexpected EOF" Build step 'Execute shell' marked build as failure Finished: FAILURE