Started by upstream project "BIOFORMATS-test-repo" build number 286
originally caused by:
Started by upstream project "Trigger" build number 305
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins8414913577899390225.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45121_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:35:58,454 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:35:58,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 00:35:58,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:35:58,457 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:35:58,458 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:35:58,458 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:35:58,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:35:58,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:35:58,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:35:58,460 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:35:58,460 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:35:58,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:35:58,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:35:58,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:35:58,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:35:58,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:35:58,662 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:35:58,662 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:35:58,662 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:35:58,663 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:35:58,663 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 00:35:58,663 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 00:35:58,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-10 00:35:58,672] [main] java.version = 11.0.16
[testng] 00:35:58,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:35:58,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:58,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-10_00-35-58.log]
[testng] 00:35:58,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-12-10 00:35:58,724] [main] testng.directory = /data
[testng] [2024-12-10 00:35:58,724] [main] testng.configDirectory = /config
[testng] [2024-12-10 00:35:58,734] [main] testng.multiplier = 1.0
[testng] [2024-12-10 00:35:58,736] [main] testng.in-memory = false
[testng] [2024-12-10 00:35:58,736] [main] testng.allow-missing = false
[testng] [2024-12-10 00:35:58,736] [main] user.language = en
[testng] [2024-12-10 00:35:58,736] [main] user.country = ${user.country}
[testng] [2024-12-10 00:35:58,736] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-10 00:36:07,549] [main] ----------------------------------------
[testng] [2024-12-10 00:36:07,549] [main] Total files: 21
[testng] [2024-12-10 00:36:07,549] [main] Scan time: 8.813 s (419 ms/file)
[testng] [2024-12-10 00:36:07,549] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-10 00:36:36,038] [pool-1-thread-1] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 00:36:36,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:36:36,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:36,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-10_00-36-36.log]
[testng] 00:36:36,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@276cc146 - End of configuration.
[testng] [2024-12-10 00:36:37,240] [pool-1-thread-12] Initializing /data/venu/VENU_Four.TIF:
[testng] 00:36:37,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:36:37,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:37,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-10_00-36-37.log]
[testng] 00:36:37,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c07ffb - End of configuration.
[testng] [2024-12-10 00:36:38,264] [pool-1-thread-11] Initializing /data/venu/VENU02.IMG:
[testng] 00:36:38,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:36:38,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:38,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-10_00-36-38.log]
[testng] 00:36:38,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f26f3e1 - End of configuration.
[testng] [2024-12-10 00:36:38,560] [pool-1-thread-10] Initializing /data/venu/VENU.TIF:
[testng] 00:36:38,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:36:38,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:38,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-10_00-36-38.log]
[testng] 00:36:38,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bd0931c - End of configuration.
[testng] [2024-12-10 00:36:39,785] [pool-1-thread-9] Initializing /data/venu/VENU_Five.TIF:
[testng] 00:36:39,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:36:39,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:39,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-10_00-36-39.log]
[testng] 00:36:39,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25caec40 - End of configuration.
[testng] [2024-12-10 00:36:40,760] [pool-1-thread-8] Initializing /data/venu/VENU_Eight.TIF:
[testng] 00:36:40,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:36:40,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:40,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-10_00-36-40.log]
[testng] 00:36:40,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f0e9246 - End of configuration.
[testng] [2024-12-10 00:36:41,568] [pool-1-thread-7] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] 00:36:41,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:36:41,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:41,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-10_00-36-41.log]
[testng] 00:36:41,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7efd1788 - End of configuration.
[testng] [2024-12-10 00:36:42,388] [pool-1-thread-6] Initializing /data/venu/VENU01.IMG:
[testng] 00:36:42,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:36:42,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:42,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-10_00-36-42.log]
[testng] 00:36:42,389 |-INFO in ch.qos.logback.core.sift.SiftProcessor@665d5c4f - End of configuration.
[testng] [2024-12-10 00:36:42,653] [pool-1-thread-5] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] 00:36:42,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:36:42,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:42,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-10_00-36-42.log]
[testng] 00:36:42,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e78b27 - End of configuration.
[testng] [2024-12-10 00:36:43,443] [pool-1-thread-4] Initializing /data/venu/VENU03.TIF:
[testng] 00:36:43,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:36:43,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:43,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-10_00-36-43.log]
[testng] 00:36:43,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a01686 - End of configuration.
[testng] [2024-12-10 00:36:44,220] [pool-1-thread-3] Initializing /data/venu/VENU02.TIF:
[testng] 00:36:44,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:36:44,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:44,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-10_00-36-44.log]
[testng] 00:36:44,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29d92183 - End of configuration.
[testng] [2024-12-10 00:36:45,097] [pool-1-thread-2] Initializing /data/venu/VENU03.IMG:
[testng] 00:36:45,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:36:45,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:45,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-10_00-36-45.log]
[testng] 00:36:45,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e783f01 - End of configuration.
[testng] [2024-12-10 00:36:49,819] [pool-1-thread-11] Initializing /data/venu/VENU_Six.TIF:
[testng] [2024-12-10 00:36:50,720] [pool-1-thread-6] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] [2024-12-10 00:36:51,615] [pool-1-thread-2] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] [2024-12-10 00:36:56,041] [pool-1-thread-10] Initializing /data/steffen/Batman_008.tif:
[testng] [2024-12-10 00:36:57,115] [pool-1-thread-12] Initializing /data/venu/VENU_Seven.TIF:
[testng] [2024-12-10 00:36:58,194] [pool-1-thread-9] Initializing /data/venu/VENU01.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 13 seconds
Finished: SUCCESS