Started by upstream project "BIOFORMATS-test-repo" build number 286
originally caused by:
 Started by upstream project "Trigger" build number 305
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins10370208007338160364.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45236_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 05:23:12,752 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 05:23:12,754 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 05:23:12,754 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:23:12,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:23:12,755 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 05:23:12,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 05:23:12,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 05:23:12,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:23:12,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:23:12,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 05:23:12,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 05:23:12,758 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 05:23:12,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 05:23:12,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 05:23:12,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 05:23:12,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 05:23:13,005 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 05:23:13,005 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 05:23:13,005 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 05:23:13,005 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 05:23:13,005 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 05:23:13,006 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 05:23:13,006 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 250 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-10 05:23:13,015] [main] java.version = 11.0.16
   [testng] 05:23:13,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 05:23:13,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:23:13,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-10_05-23-13.log]
   [testng] 05:23:13,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-12-10 05:23:13,182] [main] testng.directory = /data
   [testng] [2024-12-10 05:23:13,183] [main] testng.configDirectory = /config
   [testng] [2024-12-10 05:23:13,193] [main] testng.multiplier = 1.0
   [testng] [2024-12-10 05:23:13,194] [main] testng.in-memory = false
   [testng] [2024-12-10 05:23:13,194] [main] testng.allow-missing = false
   [testng] [2024-12-10 05:23:13,194] [main] user.language = en
   [testng] [2024-12-10 05:23:13,194] [main] user.country = ${user.country}
   [testng] [2024-12-10 05:23:13,194] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-10 05:24:08,126] [main] ----------------------------------------
   [testng] [2024-12-10 05:24:08,126] [main] Total files: 944
   [testng] [2024-12-10 05:24:08,126] [main] Scan time: 54.932 s (58 ms/file)
   [testng] [2024-12-10 05:24:08,126] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 15 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-10 05:27:06,103] [pool-1-thread-1] Initializing /data/stjude/AntoDayzerocy3OVP.tif: 
   [testng] 05:27:06,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 05:27:06,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:27:06,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-10_05-27-06.log]
   [testng] 05:27:06,106 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dcfae8c - End of configuration.
   [testng] [2024-12-10 05:27:09,077] [pool-1-thread-12] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: 
   [testng] 05:27:09,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 05:27:09,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:27:09,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-10_05-27-09.log]
   [testng] 05:27:09,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d5d0c66 - End of configuration.
   [testng] [2024-12-10 05:27:11,484] [pool-1-thread-11] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: 
   [testng] 05:27:11,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 05:27:11,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:27:11,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-10_05-27-11.log]
   [testng] 05:27:11,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d629d5b - End of configuration.
   [testng] [2024-12-10 05:27:14,343] [pool-1-thread-10] Initializing /data/stjude/AntoDayzerocy3GRP.tif: 
   [testng] 05:27:14,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 05:27:14,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:27:14,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-10_05-27-14.log]
   [testng] 05:27:14,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c518a43 - End of configuration.
   [testng] [2024-12-10 05:27:17,327] [pool-1-thread-9] Initializing /data/primate/Leica_Image.tif: 
   [testng] 05:27:17,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 05:27:17,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:27:17,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-10_05-27-17.log]
   [testng] 05:27:17,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cc9aa5c - End of configuration.
   [testng] [2024-12-10 05:27:19,829] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: 
   [testng] 05:27:19,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 05:27:19,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:27:19,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-10_05-27-19.log]
   [testng] 05:27:19,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35888df0 - End of configuration.
   [testng] [2024-12-10 05:27:22,542] [pool-1-thread-7] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: 
   [testng] 05:27:22,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 05:27:22,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:27:22,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-10_05-27-22.log]
   [testng] 05:27:22,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54935295 - End of configuration.
   [testng] [2024-12-10 05:27:25,313] [pool-1-thread-6] Initializing /data/brian/Series002_z01.tif: 
   [testng] 05:27:25,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 05:27:25,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:27:25,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-10_05-27-25.log]
   [testng] 05:27:25,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a141948 - End of configuration.
   [testng] [2024-12-10 05:27:29,520] [pool-1-thread-5] Initializing /data/martin/Series028_z00_ch00.tif: 
   [testng] 05:27:29,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 05:27:29,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:27:29,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-10_05-27-29.log]
   [testng] 05:27:29,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cb34872 - End of configuration.
   [testng] [2024-12-10 05:27:33,469] [pool-1-thread-4] Initializing /data/stjude/AntoDay1dblGRP.tif: 
   [testng] 05:27:33,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 05:27:33,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:27:33,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-10_05-27-33.log]
   [testng] 05:27:33,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@174a4b6f - End of configuration.
   [testng] [2024-12-10 05:27:36,344] [pool-1-thread-3] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: 
   [testng] 05:27:36,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 05:27:36,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:27:36,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-10_05-27-36.log]
   [testng] 05:27:36,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7336ed37 - End of configuration.
   [testng] [2024-12-10 05:29:23,631] [pool-1-thread-2] Initializing /data/brian/Series002_z00_ch00.tif: 
   [testng] 05:29:23,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 05:29:23,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:29:23,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-10_05-29-23.log]
   [testng] 05:29:23,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8686a2f - End of configuration.
   [testng] [2024-12-10 05:29:44,650] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: 
   [testng] [2024-12-10 05:29:48,009] [pool-1-thread-9] Initializing /data/stjude/AntoDay4dblmyGRP.tif: 
   [testng] [2024-12-10 05:29:53,747] [pool-1-thread-6] Initializing /data/stjude/Antoday1dblmysglGRP.tif: 
   [testng] 07:43:23,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 07:43:23,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 07:43:23,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-10_07-43-23.log]
   [testng] 07:43:23,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a17b2e3 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 795, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 140 minutes 13 seconds
Finished: SUCCESS