Started by upstream project "BIOFORMATS-test-repo" build number 287
originally caused by:
Started by upstream project "Trigger" build number 306
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins12753473985525332574.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45390_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:24:50,577 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:24:50,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 05:24:50,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:24:50,580 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:24:50,580 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:24:50,581 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:24:50,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:24:50,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:24:50,582 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:24:50,582 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:24:50,582 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:24:50,582 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:24:50,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:24:50,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:24:50,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:24:50,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:24:50,770 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:24:50,770 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:24:50,770 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:24:50,771 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:24:50,771 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 05:24:50,772 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 05:24:50,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-11 05:24:50,780] [main] java.version = 17.0.2
[testng] 05:24:50,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:24:50,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:24:50,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-11_05-24-50.log]
[testng] 05:24:50,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-11 05:24:50,827] [main] testng.directory = /data
[testng] [2024-12-11 05:24:50,827] [main] testng.configDirectory = /config
[testng] [2024-12-11 05:24:50,835] [main] testng.multiplier = 1.0
[testng] [2024-12-11 05:24:50,836] [main] testng.in-memory = false
[testng] [2024-12-11 05:24:50,836] [main] testng.allow-missing = false
[testng] [2024-12-11 05:24:50,836] [main] user.language = en
[testng] [2024-12-11 05:24:50,836] [main] user.country = ${user.country}
[testng] [2024-12-11 05:24:50,836] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-11 05:24:51,828] [main] ----------------------------------------
[testng] [2024-12-11 05:24:51,828] [main] Total files: 18
[testng] [2024-12-11 05:24:51,828] [main] Scan time: 0.992 s (55 ms/file)
[testng] [2024-12-11 05:24:51,828] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-11 05:25:12,697] [pool-1-thread-1] Initializing /data/ascb/607x.psd:
[testng] 05:25:12,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:25:12,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:12,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-11_05-25-12.log]
[testng] 05:25:12,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34c264a1 - End of configuration.
[testng] [2024-12-11 05:25:13,478] [pool-1-thread-12] Initializing /data/misc/venus_composite_8bit.psd:
[testng] 05:25:13,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:25:13,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:13,480 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-11_05-25-13.log]
[testng] 05:25:13,480 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12e0fead - End of configuration.
[testng] [2024-12-11 05:25:14,328] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 05:25:14,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:25:14,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:14,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-11_05-25-14.log]
[testng] 05:25:14,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e65cdbf - End of configuration.
[testng] [2024-12-11 05:25:15,194] [pool-1-thread-10] Initializing /data/misc/vig_drawing_1.psd:
[testng] 05:25:15,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:25:15,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:15,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-11_05-25-15.log]
[testng] 05:25:15,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2661ce21 - End of configuration.
[testng] [2024-12-11 05:25:16,020] [pool-1-thread-9] Initializing /data/misc/glossy_buttons.psd:
[testng] 05:25:16,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:25:16,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:16,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-11_05-25-16.log]
[testng] 05:25:16,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b2dfb49 - End of configuration.
[testng] [2024-12-11 05:25:16,828] [pool-1-thread-8] Initializing /data/cris/house.tif:
[testng] 05:25:16,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:25:16,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:16,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-11_05-25-16.log]
[testng] 05:25:16,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22ea119d - End of configuration.
[testng] [2024-12-11 05:25:19,367] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] 05:25:19,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:25:19,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:19,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-11_05-25-19.log]
[testng] 05:25:19,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a10322 - End of configuration.
[testng] [2024-12-11 05:25:20,180] [pool-1-thread-6] Initializing /data/big-images/8kx8k.psd:
[testng] 05:25:20,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:25:20,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:20,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-11_05-25-20.log]
[testng] 05:25:20,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2540d21d - End of configuration.
[testng] [2024-12-11 05:25:20,931] [pool-1-thread-5] Initializing /data/misc/venus_composite.psd:
[testng] 05:25:20,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:25:20,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:20,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-11_05-25-20.log]
[testng] 05:25:20,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e52e5cb - End of configuration.
[testng] [2024-12-11 05:25:21,787] [pool-1-thread-4] Initializing /data/simon/colour_separated_image.psd:
[testng] 05:25:21,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:25:21,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:21,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-11_05-25-21.log]
[testng] 05:25:21,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7de60de1 - End of configuration.
[testng] [2024-12-11 05:25:22,561] [pool-1-thread-3] Initializing /data/misc/smilie.psd:
[testng] 05:25:22,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:25:22,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:22,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-11_05-25-22.log]
[testng] 05:25:22,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50088c86 - End of configuration.
[testng] [2024-12-11 05:25:23,423] [pool-1-thread-2] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] 05:25:23,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:25:23,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:25:23,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-11_05-25-23.log]
[testng] 05:25:23,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f1ef9b0 - End of configuration.
[testng] [2024-12-11 05:25:31,793] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] [2024-12-11 05:25:32,654] [pool-1-thread-4] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] [2024-12-11 05:25:33,503] [pool-1-thread-3] Initializing /data/ascb/423.psd:
[testng] [2024-12-11 05:25:34,253] [pool-1-thread-10] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] [2024-12-11 05:25:35,071] [pool-1-thread-11] Initializing /data/misc/glossy_orbs.psd:
[testng] [2024-12-11 05:25:35,772] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 3 seconds
Finished: SUCCESS