Started by upstream project "BIOFORMATS-test-repo" build number 288
originally caused by:
Started by upstream project "Trigger" build number 307
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11039717912779196011.sh
+ '[' fv1000 = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45463_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:59:35,832 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:59:35,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 00:59:35,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:59:35,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:59:35,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:59:35,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:59:35,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:59:35,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:59:35,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:59:35,837 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:59:35,837 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:59:35,837 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:59:35,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:59:35,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:59:36,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:59:36,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:59:36,031 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:59:36,031 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:59:36,032 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:59:36,032 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:59:36,032 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 00:59:36,033 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 00:59:36,033 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-12 00:59:36,043] [main] java.version = 21
[testng] 00:59:36,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:59:36,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:59:36,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_00-59-36.log]
[testng] 00:59:36,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-12-12 00:59:36,091] [main] testng.directory = /data
[testng] [2024-12-12 00:59:36,091] [main] testng.configDirectory = /config
[testng] [2024-12-12 00:59:36,099] [main] testng.multiplier = 1.0
[testng] [2024-12-12 00:59:36,100] [main] testng.in-memory = false
[testng] [2024-12-12 00:59:36,100] [main] testng.allow-missing = false
[testng] [2024-12-12 00:59:36,100] [main] user.language = en
[testng] [2024-12-12 00:59:36,100] [main] user.country = ${user.country}
[testng] [2024-12-12 00:59:36,100] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-12 01:01:03,061] [main] ----------------------------------------
[testng] [2024-12-12 01:01:03,062] [main] Total files: 259
[testng] [2024-12-12 01:01:03,062] [main] Scan time: 86.961 s (335 ms/file)
[testng] [2024-12-12 01:01:03,062] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 144 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-12 01:26:53,157] [pool-1-thread-1] Initializing /data/molly/11OCT2.OIF:
[testng] 01:26:53,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:26:53,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:53,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-12_01-26-53.log]
[testng] 01:26:53,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78cdc4c7 - End of configuration.
[testng] [2024-12-12 01:27:42,720] [pool-1-thread-12] Initializing /data/kay/IM2pg.oib:
[testng] 01:27:42,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:27:42,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:42,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-12_01-27-42.log]
[testng] 01:27:42,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a94273 - End of configuration.
[testng] [2024-12-12 01:27:44,030] [pool-1-thread-11] Initializing /data/johannes/step2.bmp:
[testng] 01:27:44,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:27:44,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:44,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-12_01-27-44.log]
[testng] 01:27:44,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@949af37 - End of configuration.
[testng] [2024-12-12 01:27:44,536] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib:
[testng] 01:27:44,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:27:44,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:44,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-12_01-27-44.log]
[testng] 01:27:44,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a0069cd - End of configuration.
[testng] [2024-12-12 01:27:46,543] [pool-1-thread-9] Initializing /data/chris/missegragation-15.oib:
[testng] 01:27:46,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:27:46,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:46,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-12_01-27-46.log]
[testng] 01:27:46,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75b09476 - End of configuration.
[testng] [2024-12-12 01:27:48,041] [pool-1-thread-8] Initializing /data/aryeh/1h_after_pdt.oib:
[testng] 01:27:48,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:27:48,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:48,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-12_01-27-48.log]
[testng] 01:27:48,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47d160bd - End of configuration.
[testng] [2024-12-12 01:27:51,795] [pool-1-thread-7] Initializing /data/allan/new_30min3_1z2.oib:
[testng] 01:27:51,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:27:51,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:51,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-12_01-27-51.log]
[testng] 01:27:51,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c1a9a74 - End of configuration.
[testng] [2024-12-12 01:27:54,321] [pool-1-thread-6] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib:
[testng] 01:27:54,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:27:54,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:54,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-12_01-27-54.log]
[testng] 01:27:54,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cbcfc18 - End of configuration.
[testng] [2024-12-12 01:27:55,273] [pool-1-thread-5] Initializing /data/glen/LUT issue/Greenredfarred.oif:
[testng] 01:27:55,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:27:55,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:55,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-12_01-27-55.log]
[testng] 01:27:55,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@118ef4b4 - End of configuration.
[testng] [2024-12-12 01:27:57,356] [pool-1-thread-4] Initializing /data/stefan/cytosol_01a.oif:
[testng] 01:27:57,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:27:57,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:27:57,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-12_01-27-57.log]
[testng] 01:27:57,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf61f86 - End of configuration.
[testng] [2024-12-12 01:30:25,140] [pool-1-thread-3] Initializing /data/shane/Data Subset/NESTIN_control2.oif:
[testng] 01:30:25,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:30:25,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:25,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-12_01-30-25.log]
[testng] 01:30:25,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14efaf31 - End of configuration.
[testng] [2024-12-12 01:30:27,495] [pool-1-thread-2] Initializing /data/glen/LUT issue/60x11.oif:
[testng] 01:30:27,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:30:27,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:30:27,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-12_01-30-27.log]
[testng] 01:30:27,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ab95c50 - End of configuration.
[testng] [2024-12-12 01:30:42,726] [pool-1-thread-11] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib:
[testng] [2024-12-12 01:30:54,187] [pool-1-thread-9] Initializing /data/aryeh/1h.oib:
[testng] [2024-12-12 01:30:56,357] [pool-1-thread-7] Initializing /data/david/Image0016.oib:
[testng] [2024-12-12 01:30:57,861] [pool-1-thread-6] Initializing /data/brian/Kaede-Neuron-9XYZ.oib:
[testng] [2024-12-12 01:30:59,126] [pool-1-thread-10] Initializing /data/johannes/step4b.bmp:
[testng] [2024-12-12 01:30:59,365] [pool-1-thread-12] Initializing /data/jcb/200909024/Sup Fig 2/2.oib:
[testng] [2024-12-12 01:31:05,511] [pool-1-thread-10] Initializing /data/jcb/200909024/Sup Fig 2/4.oib:
[testng] [2024-12-12 01:31:11,633] [pool-1-thread-7] Initializing /data/tom/RGB-1.avi:
[testng] [2024-12-12 01:31:12,826] [pool-1-thread-12] Initializing /data/aryeh/control_test.oib:
[testng] [2024-12-12 01:31:17,168] [pool-1-thread-6] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib:
[testng] [2024-12-12 01:31:19,395] [pool-1-thread-8] Initializing /data/glen/singlesimul.oif:
[testng] [2024-12-12 01:31:24,015] [pool-1-thread-9] Initializing /data/johannes/step4.bmp:
[testng] [2024-12-12 01:31:30,258] [pool-1-thread-10] Initializing /data/johannes/step3.bmp:
[testng] [2024-12-12 01:31:31,263] [pool-1-thread-9] Initializing /data/glen/Image0002.oif:
[testng] [2024-12-12 01:31:45,337] [pool-1-thread-11] Initializing /data/brian/CagedATP CaG7a.oib:
[testng] [2024-12-12 01:31:48,985] [pool-1-thread-7] Initializing /data/glen/seqlinestack.oib:
[testng] [2024-12-12 01:31:53,663] [pool-1-thread-10] Initializing /data/johannes/Image0010/Image0010.oif:
[testng] [2024-12-12 01:31:59,173] [pool-1-thread-6] Initializing /data/jean-claude/villositerat0heurea.oib:
[testng] [2024-12-12 01:32:05,339] [pool-1-thread-11] Initializing /data/qa-17748/Image0079.oib:
[testng] [2024-12-12 01:32:07,697] [pool-1-thread-12] Initializing /data/johannes/step1.bmp:
[testng] [2024-12-12 01:32:09,062] [pool-1-thread-7] Initializing /data/glen/singleseqframe.oib:
[testng] [2024-12-12 01:32:14,687] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib:
[testng] [2024-12-12 01:32:17,803] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib:
[testng] [2024-12-12 01:32:23,254] [pool-1-thread-11] Initializing /data/bojana/XYT_FirstBolus.oib:
[testng] [2024-12-12 01:32:30,405] [pool-1-thread-7] Initializing /data/glen/singleseqline.oib:
[testng] [2024-12-12 01:32:32,549] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib:
[testng] [2024-12-12 01:32:36,605] [pool-1-thread-12] Initializing /data/glen/QuitIJ/4202A2chtest.oib:
[testng] [2024-12-12 01:32:41,384] [pool-1-thread-6] Initializing /data/yoshihito/XY.oib:
[testng] [2024-12-12 01:32:44,427] [pool-1-thread-11] Initializing /data/glen/LUT issue/UVgreenredfarred.oif:
[testng] [2024-12-12 01:32:46,859] [pool-1-thread-7] Initializing /data/aryeh/030408 2 1.oib:
[testng] [2024-12-12 01:32:54,782] [pool-1-thread-3] Initializing /data/michael/CELL3.oib:
[testng] [2024-12-12 01:32:56,957] [pool-1-thread-12] Initializing /data/brian/CFP-GFP2.oib:
[testng] [2024-12-12 01:33:02,092] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib:
[testng] [2024-12-12 01:33:06,147] [pool-1-thread-5] Initializing /data/simon/never_worked.oib:
[testng] [2024-12-12 01:33:11,725] [pool-1-thread-7] Initializing /data/johannes/step5b.bmp:
[testng] [2024-12-12 01:33:15,221] [pool-1-thread-3] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib:
[testng] [2024-12-12 01:33:18,118] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oif:
[testng] [2024-12-12 01:33:22,361] [pool-1-thread-7] Initializing /data/molly/11OCT5.OIF:
[testng] [2024-12-12 01:34:03,266] [pool-1-thread-6] Initializing /data/brian/lambda02nm.oib:
[testng] [2024-12-12 01:34:06,016] [pool-1-thread-5] Initializing /data/glen/15min 200neo lyso SO1.oib:
[testng] [2024-12-12 01:34:13,492] [pool-1-thread-3] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib:
[testng] [2024-12-12 01:34:16,075] [pool-1-thread-6] Initializing /data/brian/PA-GFP-3.oib:
[testng] [2024-12-12 01:34:18,661] [pool-1-thread-8] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib:
[testng] [2024-12-12 01:34:22,664] [pool-1-thread-5] Initializing /data/marc/V0606L.oib:
[testng] [2024-12-12 01:34:29,851] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib:
[testng] [2024-12-12 01:34:32,601] [pool-1-thread-8] Initializing /data/brian/Lambda10nm.oib:
[testng] [2024-12-12 01:34:34,730] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib:
[testng] [2024-12-12 01:34:41,646] [pool-1-thread-3] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp:
[testng] [2024-12-12 01:34:41,968] [pool-1-thread-8] Initializing /data/brian/NEURON_TIMELAPS_2.oib:
[testng] [2024-12-12 01:34:45,248] [pool-1-thread-6] Initializing /data/shane/Data Subset/EXX6-10G30%.oib:
[testng] [2024-12-12 01:34:46,674] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib:
[testng] [2024-12-12 01:34:48,610] [pool-1-thread-5] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif:
[testng] [2024-12-12 01:35:16,437] [pool-1-thread-8] Initializing /data/molly/11OCT6.OIF:
[testng] [2024-12-12 01:35:51,970] [pool-1-thread-6] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib:
[testng] [2024-12-12 01:35:53,965] [pool-1-thread-12] Initializing /data/david/Image0016.oif:
[testng] [2024-12-12 01:35:58,279] [pool-1-thread-3] Initializing /data/glen/notsaturated.oif:
[testng] [2024-12-12 01:36:09,866] [pool-1-thread-11] Initializing /data/marc/V0606J.oib:
[testng] [2024-12-12 01:36:13,502] [pool-1-thread-6] Initializing /data/molly/11OCT7.OIF:
[testng] [2024-12-12 01:37:03,373] [pool-1-thread-11] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib:
[testng] [2024-12-12 01:37:15,275] [pool-1-thread-11] Initializing /data/aryeh/BP3 3h ch2.oif:
[testng] [2024-12-12 01:39:15,030] [pool-1-thread-10] Initializing /data/stefan/test-with-stefan071024.oib:
[testng] [2024-12-12 01:39:35,717] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib:
[testng] [2024-12-12 01:39:49,204] [pool-1-thread-10] Initializing /data/sten/01.oib:
[testng] [2024-12-12 01:39:59,681] [pool-1-thread-10] Initializing /data/brian/MitoRed-POPO3.oib:
[testng] [2024-12-12 01:40:09,695] [pool-1-thread-12] Initializing /data/shane/Data Subset/EXX4-10G40%.oib:
[testng] [2024-12-12 01:40:10,922] [pool-1-thread-10] Initializing /data/glen/QuitIJ/4202A2chtest.oif:
[testng] [2024-12-12 01:40:25,353] [pool-1-thread-12] Initializing /data/brian/Kaede15.oib:
[testng] [2024-12-12 01:40:38,283] [pool-1-thread-12] Initializing /data/molly/11OCT8.OIF:
[testng] [2024-12-12 01:56:06,412] [pool-1-thread-3] Initializing /data/jae/Image0001.oib:
[testng] [2024-12-12 01:56:18,212] [pool-1-thread-3] Initializing /data/molly/13SH2bUTRtime4b.oib:
[testng] [2024-12-12 01:56:29,554] [pool-1-thread-3] Initializing /data/glen/4205basal106072.oif:
[testng] [2024-12-12 02:02:50,707] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib:
[testng] [2024-12-12 02:02:59,953] [pool-1-thread-2] Initializing /data/dan/outerEV1solu6new.oib:
[testng] [2024-12-12 02:03:09,005] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib:
[testng] [2024-12-12 02:03:18,690] [pool-1-thread-2] Initializing /data/simon/used_to_work.oib:
[testng] [2024-12-12 02:03:27,675] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif:
[testng] [2024-12-12 02:04:10,324] [pool-1-thread-10] Initializing /data/stefan/YC2_spectrum-405.oib:
[testng] [2024-12-12 02:04:18,803] [pool-1-thread-10] Initializing /data/qa-17748/Image0098.oib:
[testng] [2024-12-12 02:04:26,851] [pool-1-thread-10] Initializing /data/stephane/817A_3-0003_01.oib:
[testng] [2024-12-12 02:04:31,057] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7.oib:
[testng] [2024-12-12 02:04:36,107] [pool-1-thread-10] Initializing /data/christian/20min.oif:
[testng] [2024-12-12 02:04:51,411] [pool-1-thread-2] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib:
[testng] [2024-12-12 02:05:12,437] [pool-1-thread-2] Initializing /data/glen/111407.oif:
[testng] [2024-12-12 02:05:38,422] [pool-1-thread-10] Initializing /data/glen/simulstack.oif:
[testng] [2024-12-12 02:10:54,256] [pool-1-thread-9] Initializing /data/brian/LILY POLLEN.oib:
[testng] [2024-12-12 02:11:09,949] [pool-1-thread-9] Initializing /data/yasunori/series_1.oib:
[testng] [2024-12-12 02:11:25,185] [pool-1-thread-9] Initializing /data/ramon/Image_01_01_01_01.oif:
[testng] [2024-12-12 02:20:07,067] [pool-1-thread-9] Initializing /data/satoshi/60x_5x_1.oif:
[testng] [2024-12-12 02:21:49,249] [pool-1-thread-7] Initializing /data/shane/Data Subset/MHC1_control.oif:
[testng] [2024-12-12 02:22:44,159] [pool-1-thread-6] Initializing /data/glen/singleseqline.oif:
[testng] [2024-12-12 02:23:32,104] [pool-1-thread-7] Initializing /data/glen/simulstack.oib:
[testng] [2024-12-12 02:23:45,319] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib:
[testng] [2024-12-12 02:24:01,381] [pool-1-thread-7] Initializing /data/pedro/plv-test.oib:
[testng] [2024-12-12 02:24:15,986] [pool-1-thread-7] Initializing /data/tom/zseries-test.oib:
[testng] [2024-12-12 02:24:32,402] [pool-1-thread-7] Initializing /data/allan/62909#1.oib:
[testng] [2024-12-12 02:24:45,126] [pool-1-thread-7] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif:
[testng] [2024-12-12 02:25:13,960] [pool-1-thread-6] Initializing /data/molly/11OCT10.OIF:
[testng] [2024-12-12 02:30:12,262] [pool-1-thread-9] Initializing /data/stefan/cytosol_08b.oif:
[testng] [2024-12-12 02:31:36,743] [pool-1-thread-8] Initializing /data/brian/FLIP.oib:
[testng] [2024-12-12 02:31:53,473] [pool-1-thread-8] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif:
[testng] [2024-12-12 02:35:00,465] [pool-1-thread-12] Initializing /data/molly/11OCT11.OIF:
[testng] [2024-12-12 02:45:42,985] [pool-1-thread-2] Initializing /data/yoshihito/XY.oif:
[testng] [2024-12-12 02:46:00,929] [pool-1-thread-5] Initializing /data/barbara/Image_with_working_import.oib:
[testng] [2024-12-12 02:46:10,404] [pool-1-thread-5] Initializing /data/stefan/yc2_live-03.oib:
[testng] [2024-12-12 02:46:24,768] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib:
[testng] [2024-12-12 02:46:30,470] [pool-1-thread-10] Initializing /data/shane/Data Subset/Ex3sol.oif:
[testng] [2024-12-12 02:46:36,583] [pool-1-thread-5] Initializing /data/johannes/Image0006/Image0006.oif:
[testng] [2024-12-12 02:46:39,516] [pool-1-thread-2] Initializing /data/brian/Caged Glu-3 point.oib:
[testng] [2024-12-12 02:46:49,671] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG+FuraR3.oib:
[testng] [2024-12-12 02:46:58,574] [pool-1-thread-2] Initializing /data/karl/Image0009.oib:
[testng] [2024-12-12 02:47:08,316] [pool-1-thread-2] Initializing /data/molly/11OCT4.OIF:
[testng] [2024-12-12 02:48:27,209] [pool-1-thread-10] Initializing /data/francesco/fGfp.c15.oib:
[testng] [2024-12-12 02:48:37,023] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib:
[testng] [2024-12-12 02:48:49,446] [pool-1-thread-10] Initializing /data/molly/11OCT9.OIF:
[testng] 02:52:15,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:52:15,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:52:15,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-12_02-52-15.log]
[testng] 02:52:15,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47d7675b - End of configuration.
[testng] [2024-12-12 02:52:36,379] [pool-1-thread-8] Initializing /data/brian/PA-GFPv-2.oib:
[testng] [2024-12-12 02:52:46,044] [pool-1-thread-8] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib:
[testng] [2024-12-12 02:52:53,714] [pool-1-thread-5] Initializing /data/stefan/cytosol_03e.oib:
[testng] [2024-12-12 02:52:56,001] [pool-1-thread-8] Initializing /data/alex/31h_pea3_fgf10_01_1.oif:
[testng] [2024-12-12 02:53:10,802] [pool-1-thread-5] Initializing /data/lavinia/NM1-RibA-RibB-side.oib:
[testng] [2024-12-12 02:53:19,992] [pool-1-thread-5] Initializing /data/molly/11OCT3.OIF:
[testng] [2024-12-12 02:56:53,686] [pool-1-thread-3] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp:
[testng] [2024-12-12 02:56:59,280] [pool-1-thread-3] Initializing /data/johannes/Image0016/Image0016.oif:
[testng] [2024-12-12 03:02:26,211] [pool-1-thread-1] Initializing /data/monica/Image0056.oif:
[testng] [2024-12-12 03:04:16,946] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib:
[testng] [2024-12-12 03:04:30,689] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX7-10G30% .oib:
[testng] [2024-12-12 03:04:42,914] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oif:
[testng] [2024-12-12 03:06:23,109] [pool-1-thread-3] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib:
[testng] [2024-12-12 03:06:37,459] [pool-1-thread-3] Initializing /data/barbara/Image_with_failed_import.oib:
[testng] [2024-12-12 03:06:47,113] [pool-1-thread-3] Initializing /data/glen/notsaturated.oib:
[testng] [2024-12-12 03:06:58,667] [pool-1-thread-3] Initializing /data/glen/singlesimul.oib:
[testng] [2024-12-12 03:07:08,005] [pool-1-thread-3] Initializing /data/glen/Null file/test no change.oif:
[testng] [2024-12-12 03:08:17,510] [pool-1-thread-3] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif:
[testng] 03:55:49,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:55:49,006 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:55:49,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-12_03-55-49.log]
[testng] 03:55:49,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a2f7f2c - End of configuration.
[testng] 04:10:48,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:10:48,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:10:48,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-12_04-10-48.log]
[testng] 04:10:48,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1583acea - End of configuration.
[testng] 05:12:35,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:12:35,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:12:35,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-12_05-12-35.log]
[testng] 05:12:35,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13e76a82 - End of configuration.
[testng] 06:06:59,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:06:59,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:06:59,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-12_06-06-59.log]
[testng] 06:06:59,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3559bb82 - End of configuration.
[testng] 06:28:22,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:28:22,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:28:22,815 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_06-28-22.log]
[testng] 06:28:22,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a0d555f - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 7632, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 328 minutes 51 seconds
Finished: SUCCESS