Started by upstream project "BIOFORMATS-test-repo" build number 288
originally caused by:
Started by upstream project "Trigger" build number 307
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins9595178723918228254.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45516_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:04:00,655 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:04:00,656 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 05:04:00,656 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:04:00,657 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:04:00,658 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:04:00,658 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:04:00,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:04:00,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:04:00,659 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:04:00,660 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:04:00,660 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:04:00,660 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:04:00,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:04:00,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:04:00,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:04:00,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:04:00,863 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:04:00,863 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:04:00,863 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:04:00,864 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:04:00,864 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 05:04:00,865 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 05:04:00,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 206 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-12 05:04:00,873] [main] java.version = 21
[testng] 05:04:00,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:04:00,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:00,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_05-04-00.log]
[testng] 05:04:00,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-12-12 05:04:00,921] [main] testng.directory = /data
[testng] [2024-12-12 05:04:00,921] [main] testng.configDirectory = /config
[testng] [2024-12-12 05:04:00,930] [main] testng.multiplier = 1.0
[testng] [2024-12-12 05:04:00,930] [main] testng.in-memory = false
[testng] [2024-12-12 05:04:00,931] [main] testng.allow-missing = false
[testng] [2024-12-12 05:04:00,931] [main] user.language = en
[testng] [2024-12-12 05:04:00,931] [main] user.country = ${user.country}
[testng] [2024-12-12 05:04:00,931] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-12 05:04:01,385] [main] ----------------------------------------
[testng] [2024-12-12 05:04:01,385] [main] Total files: 19
[testng] [2024-12-12 05:04:01,385] [main] Scan time: 0.454 s (23 ms/file)
[testng] [2024-12-12 05:04:01,386] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-12 05:04:19,083] [pool-1-thread-1] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 05:04:19,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:04:19,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:19,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-12_05-04-19.log]
[testng] 05:04:19,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fb7d72c - End of configuration.
[testng] [2024-12-12 05:04:20,100] [pool-1-thread-12] Initializing /data/samples/400R PICT0003.MRW:
[testng] 05:04:20,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:04:20,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:20,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-12_05-04-20.log]
[testng] 05:04:20,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64eae3ea - End of configuration.
[testng] [2024-12-12 05:04:21,069] [pool-1-thread-11] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 05:04:21,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:04:21,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:21,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-12_05-04-21.log]
[testng] 05:04:21,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2082a6ed - End of configuration.
[testng] [2024-12-12 05:04:22,000] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW:
[testng] 05:04:22,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:04:22,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:22,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-12_05-04-22.log]
[testng] 05:04:22,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@253e58ee - End of configuration.
[testng] [2024-12-12 05:04:23,152] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 05:04:23,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:04:23,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:23,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-12_05-04-23.log]
[testng] 05:04:23,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cb879d8 - End of configuration.
[testng] [2024-12-12 05:04:24,031] [pool-1-thread-8] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] 05:04:24,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:04:24,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:24,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-12_05-04-24.log]
[testng] 05:04:24,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eaea136 - End of configuration.
[testng] [2024-12-12 05:04:24,935] [pool-1-thread-7] Initializing /data/samples/200R PICT0002.MRW:
[testng] 05:04:24,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:04:24,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:24,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-12_05-04-24.log]
[testng] 05:04:24,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64ed2914 - End of configuration.
[testng] [2024-12-12 05:04:25,878] [pool-1-thread-6] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 05:04:25,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:04:25,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:25,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-12_05-04-25.log]
[testng] 05:04:25,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@753f39c1 - End of configuration.
[testng] [2024-12-12 05:04:26,788] [pool-1-thread-5] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] 05:04:26,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:04:26,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:26,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-12_05-04-26.log]
[testng] 05:04:26,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eaef7c8 - End of configuration.
[testng] [2024-12-12 05:04:27,525] [pool-1-thread-4] Initializing /data/samples/800R PICT0010.MRW:
[testng] 05:04:27,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:04:27,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:27,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-12_05-04-27.log]
[testng] 05:04:27,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a3bbdd5 - End of configuration.
[testng] [2024-12-12 05:04:28,242] [pool-1-thread-3] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 05:04:28,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:04:28,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:28,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-12_05-04-28.log]
[testng] 05:04:28,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ec4cef8 - End of configuration.
[testng] [2024-12-12 05:04:29,092] [pool-1-thread-2] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] 05:04:29,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:04:29,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:04:29,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-12_05-04-29.log]
[testng] 05:04:29,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6de033c5 - End of configuration.
[testng] [2024-12-12 05:04:43,637] [pool-1-thread-2] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] [2024-12-12 05:04:44,868] [pool-1-thread-1] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] [2024-12-12 05:04:46,003] [pool-1-thread-6] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] [2024-12-12 05:04:47,301] [pool-1-thread-10] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-12-12 05:04:48,619] [pool-1-thread-3] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2024-12-12 05:04:49,986] [pool-1-thread-5] Initializing /data/samples/3200R PICT0006.MRW:
[testng] [2024-12-12 05:04:51,285] [pool-1-thread-11] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 6 seconds
Finished: SUCCESS