Started by upstream project "BIOFORMATS-test-repo" build number 288 originally caused by: Started by upstream project "Trigger" build number 307 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins4328116778339909901.sh + '[' apng = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45548_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 07:43:05,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:43:05,938 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 07:43:05,938 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:43:05,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:43:05,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:43:05,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:43:05,940 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:43:05,940 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:43:05,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:43:05,941 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:43:05,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:43:05,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:43:06,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:43:06,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:43:06,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:43:06,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:43:06,121 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:43:06,121 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:43:06,121 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:43:06,122 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:43:06,122 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 07:43:06,122 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 07:43:06,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-12 07:43:06,131] [main] java.version = 21 [testng] 07:43:06,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:43:06,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:06,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-12_07-43-06.log] [testng] 07:43:06,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-12 07:43:06,176] [main] testng.directory = /data [testng] [2024-12-12 07:43:06,176] [main] testng.configDirectory = /config [testng] [2024-12-12 07:43:06,184] [main] testng.multiplier = 1.0 [testng] [2024-12-12 07:43:06,185] [main] testng.in-memory = false [testng] [2024-12-12 07:43:06,185] [main] testng.allow-missing = false [testng] [2024-12-12 07:43:06,185] [main] user.language = en [testng] [2024-12-12 07:43:06,185] [main] user.country = ${user.country} [testng] [2024-12-12 07:43:06,185] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-12 07:43:08,014] [main] ---------------------------------------- [testng] [2024-12-12 07:43:08,014] [main] Total files: 21 [testng] [2024-12-12 07:43:08,014] [main] Scan time: 1.829 s (87 ms/file) [testng] [2024-12-12 07:43:08,014] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-12 07:43:19,020] [pool-1-thread-1] Initializing /data/samples/StarV838.png: [testng] 07:43:19,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:43:19,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:19,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-12_07-43-19.log] [testng] 07:43:19,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19d143be - End of configuration. [testng] [2024-12-12 07:43:19,266] [pool-1-thread-12] Initializing /data/samples/william_wong04.png: [testng] 07:43:19,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:43:19,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:19,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-12_07-43-19.log] [testng] 07:43:19,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55cfa29 - End of configuration. [testng] [2024-12-12 07:43:19,303] [pool-1-thread-11] Initializing /data/samples/joanna_viera01.png: [testng] 07:43:19,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:43:19,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:19,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-12_07-43-19.log] [testng] 07:43:19,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63156615 - End of configuration. [testng] [2024-12-12 07:43:19,332] [pool-1-thread-10] Initializing /data/samples/daniel_coltri_two.png: [testng] 07:43:19,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:43:19,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:19,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-12_07-43-19.log] [testng] 07:43:19,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38ee30dc - End of configuration. [testng] [2024-12-12 07:43:19,368] [pool-1-thread-9] Initializing /data/samples/Matrix.png: [testng] 07:43:19,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:43:19,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:19,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-12_07-43-19.log] [testng] 07:43:19,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77c969d - End of configuration. [testng] [2024-12-12 07:43:19,402] [pool-1-thread-8] Initializing /data/qa-7473/n.tif: [testng] 07:43:19,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:43:19,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:19,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-12_07-43-19.log] [testng] 07:43:19,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30242494 - End of configuration. [testng] [2024-12-12 07:43:21,284] [pool-1-thread-7] Initializing /data/samples/PhugAnimation3.png: [testng] 07:43:21,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:43:21,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:21,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-12_07-43-21.log] [testng] 07:43:21,285 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69bce35c - End of configuration. [testng] [2024-12-12 07:43:21,335] [pool-1-thread-6] Initializing /data/samples/MoonPhases.png: [testng] 07:43:21,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:43:21,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:21,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-12_07-43-21.log] [testng] 07:43:21,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ee272da - End of configuration. [testng] [2024-12-12 07:43:21,368] [pool-1-thread-5] Initializing /data/samples/chompy2.png: [testng] 07:43:21,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:43:21,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:21,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-12_07-43-21.log] [testng] 07:43:21,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bd11036 - End of configuration. [testng] [2024-12-12 07:43:21,501] [pool-1-thread-4] Initializing /data/samples/william_wong01.png: [testng] 07:43:21,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:43:21,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:21,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-12_07-43-21.log] [testng] 07:43:21,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b740ad0 - End of configuration. [testng] [2024-12-12 07:43:21,578] [pool-1-thread-3] Initializing /data/samples/william_wong05.png: [testng] 07:43:21,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:43:21,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:21,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-12_07-43-21.log] [testng] 07:43:21,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b9df8c - End of configuration. [testng] [2024-12-12 07:43:21,758] [pool-1-thread-2] Initializing /data/qa-7473/x.png: [testng] 07:43:21,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:43:21,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:21,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-12_07-43-21.log] [testng] 07:43:21,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@317cafa8 - End of configuration. [testng] [2024-12-12 07:43:25,762] [pool-1-thread-2] Initializing /data/samples/spinfox.png: [testng] [2024-12-12 07:43:26,049] [pool-1-thread-3] Initializing /data/samples/monkey_apng.png: [testng] [2024-12-12 07:43:26,070] [pool-1-thread-11] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-12-12 07:43:26,104] [pool-1-thread-10] Initializing /data/colin/test.sfstdge.png: [testng] [2024-12-12 07:43:26,387] [pool-1-thread-4] Initializing /data/samples/phug_logo.png: [testng] [2024-12-12 07:43:26,423] [pool-1-thread-12] Initializing /data/samples/orbit.png: [testng] [2024-12-12 07:43:26,472] [pool-1-thread-9] Initializing /data/samples/william_wong02.png: [testng] [2024-12-12 07:43:26,539] [pool-1-thread-7] Initializing /data/samples/Sun.png: [testng] [2024-12-12 07:43:26,687] [pool-1-thread-6] Initializing /data/samples/atom.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 34 seconds Finished: SUCCESS