Started by upstream project "BIOFORMATS-test-repo" build number 289 originally caused by: Started by upstream project "Trigger" build number 308 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins18322262506727547775.sh + '[' zip = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45607_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:32:31,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:32:31,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:32:32,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:32:32,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:32:32,044 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:32:32,044 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:32:32,044 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:32:32,045 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:32:32,045 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 00:32:32,046 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 00:32:32,046 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 450 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-13 00:32:32,057] [main] java.version = 1.8.0_342 [testng] 00:32:32,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:32:32,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:32,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_00-32-32.log] [testng] 00:32:32,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-13 00:32:32,113] [main] testng.directory = /data [testng] [2024-12-13 00:32:32,113] [main] testng.configDirectory = /config [testng] [2024-12-13 00:32:32,125] [main] testng.multiplier = 1.0 [testng] [2024-12-13 00:32:32,126] [main] testng.in-memory = false [testng] [2024-12-13 00:32:32,126] [main] testng.allow-missing = false [testng] [2024-12-13 00:32:32,126] [main] user.language = en [testng] [2024-12-13 00:32:32,126] [main] user.country = ${user.country} [testng] [2024-12-13 00:32:32,126] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-13 00:32:36,744] [main] ---------------------------------------- [testng] [2024-12-13 00:32:36,744] [main] Total files: 22 [testng] [2024-12-13 00:32:36,744] [main] Scan time: 4.618 s (209 ms/file) [testng] [2024-12-13 00:32:36,744] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 22 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-13 00:36:33,141] [pool-1-thread-1] Initializing /data/samples/sdub.zip: [testng] 00:36:33,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:36:33,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:33,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_00-36-33.log] [testng] 00:36:33,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@604fb588 - End of configuration. [testng] [2024-12-13 00:36:34,944] [pool-1-thread-12] Initializing /data/imagej/mri-stack.zip: [testng] 00:36:34,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:36:34,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:34,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_00-36-34.log] [testng] 00:36:34,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29faef9c - End of configuration. [testng] [2024-12-13 00:36:41,785] [pool-1-thread-11] Initializing /data/imagej/hela-cells.zip: [testng] 00:36:41,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:36:41,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:41,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_00-36-41.log] [testng] 00:36:41,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47e4fe76 - End of configuration. [testng] [2024-12-13 00:36:49,658] [pool-1-thread-10] Initializing /data/imagej/watershed-animation.zip: [testng] 00:36:49,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:36:49,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:49,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_00-36-49.log] [testng] 00:36:49,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60d9f6d0 - End of configuration. [testng] [2024-12-13 00:36:57,274] [pool-1-thread-9] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: [testng] 00:36:57,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:36:57,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:57,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-13_00-36-57.log] [testng] 00:36:57,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18fd55db - End of configuration. [testng] [2024-12-13 00:37:15,598] [pool-1-thread-8] Initializing /data/imagej/gel-electrophoresis.zip: [testng] 00:37:15,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:37:15,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:15,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_00-37-15.log] [testng] 00:37:15,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a5a30f1 - End of configuration. [testng] [2024-12-13 00:37:23,321] [pool-1-thread-7] Initializing /data/imagej/cheetah_256_8.tif.zip: [testng] 00:37:23,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:37:23,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:23,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_00-37-23.log] [testng] 00:37:23,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5456e28f - End of configuration. [testng] [2024-12-13 00:37:31,264] [pool-1-thread-6] Initializing /data/imagej/xrays.zip: [testng] 00:37:31,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:37:31,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:31,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_00-37-31.log] [testng] 00:37:31,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@238e95e4 - End of configuration. [testng] [2024-12-13 00:37:35,463] [pool-1-thread-5] Initializing /data/imagej/confocal-stack.zip: [testng] 00:37:35,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:37:35,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:35,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_00-37-35.log] [testng] 00:37:35,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a9d52bc - End of configuration. [testng] [2024-12-13 00:37:56,531] [pool-1-thread-4] Initializing /data/imagej/FluorescentCells.zip: [testng] 00:37:56,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:37:56,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:56,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_00-37-56.log] [testng] 00:37:56,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51c6ce2d - End of configuration. [testng] [2024-12-13 00:38:03,877] [pool-1-thread-3] Initializing /data/imagej/fat-cells.zip: [testng] 00:38:03,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:38:03,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:03,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_00-38-03.log] [testng] 00:38:03,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e04d0e5 - End of configuration. [testng] [2024-12-13 00:38:14,194] [pool-1-thread-2] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: [testng] 00:38:14,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:38:14,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:14,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_00-38-14.log] [testng] 00:38:14,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25cb3c02 - End of configuration. [testng] [2024-12-13 00:38:53,159] [pool-1-thread-1] Initializing /data/imagej/se3.zip: [testng] [2024-12-13 00:39:40,519] [pool-1-thread-6] Initializing /data/imagej/RatBrain.zip: [testng] [2024-12-13 00:40:04,041] [pool-1-thread-12] Initializing /data/imagej/blood-brain-barrier.zip: [testng] [2024-12-13 00:40:23,947] [pool-1-thread-10] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: [testng] [2024-12-13 00:40:35,484] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip: [testng] [2024-12-13 00:40:43,528] [pool-1-thread-7] Initializing /data/imagej/confocal-series.zip: [testng] [2024-12-13 00:41:24,148] [pool-1-thread-8] Initializing /data/imagej/3D_Chromosome.zip: [testng] [2024-12-13 00:41:32,944] [pool-1-thread-11] Initializing /data/imagej/flybrain.zip: [testng] [2024-12-13 00:41:50,667] [pool-1-thread-2] Initializing /data/imagej/m51.zip: [testng] [2024-12-13 00:41:55,377] [pool-1-thread-6] Initializing /data/samples/bat-cochlea-volume.zip: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1166, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 15 minutes 4 seconds Finished: SUCCESS