Started by upstream project "BIOFORMATS-test-repo" build number 289
originally caused by:
Started by upstream project "Trigger" build number 308
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins16526886707412837185.sh
+ '[' amira = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45609_merge_ci -v /uod/idr/repos/curated/amira:/data -v /uod/idr-scratch/merge-ci/curated/amira:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:33:47,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:33:47,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:33:47,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:33:47,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:33:47,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:33:47,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:33:47,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:33:47,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:33:47,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:33:47,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:33:47,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:33:47,203 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:33:47,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:33:47,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:33:47,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:33:47,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:33:47,458 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:33:47,458 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:33:47,458 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:33:47,458 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:33:47,458 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:33:47,459 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:33:47,459 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-13 00:33:47,469] [main] java.version = 1.8.0_342
[testng] 00:33:47,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:33:47,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:33:47,516 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_00-33-47.log]
[testng] 00:33:47,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-13 00:33:47,520] [main] testng.directory = /data
[testng] [2024-12-13 00:33:47,520] [main] testng.configDirectory = /config
[testng] [2024-12-13 00:33:47,532] [main] testng.multiplier = 1.0
[testng] [2024-12-13 00:33:47,532] [main] testng.in-memory = false
[testng] [2024-12-13 00:33:47,532] [main] testng.allow-missing = false
[testng] [2024-12-13 00:33:47,532] [main] user.language = en
[testng] [2024-12-13 00:33:47,533] [main] user.country = ${user.country}
[testng] [2024-12-13 00:33:47,533] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-13 00:33:56,167] [main] ----------------------------------------
[testng] [2024-12-13 00:33:56,167] [main] Total files: 15
[testng] [2024-12-13 00:33:56,167] [main] Scan time: 8.634 s (575 ms/file)
[testng] [2024-12-13 00:33:56,167] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 12 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-13 00:34:13,749] [pool-1-thread-1] Initializing /data/ilya/test.am:
[testng] 00:34:13,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:34:13,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:13,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_00-34-13.log]
[testng] 00:34:13,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49a8234b - End of configuration.
[testng] [2024-12-13 00:34:14,640] [pool-1-thread-12] Initializing /data/jeremy/Virus_Membrane7.am:
[testng] 00:34:14,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:34:14,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:14,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_00-34-14.log]
[testng] 00:34:14,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ed42dc - End of configuration.
[testng] [2024-12-13 00:34:15,392] [pool-1-thread-11] Initializing /data/jeremy/Virus_Membrane7-screenshot.PNG:
[testng] 00:34:15,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:34:15,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:15,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_00-34-15.log]
[testng] 00:34:15,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bac0dd2 - End of configuration.
[testng] [2024-12-13 00:34:15,454] [pool-1-thread-10] Initializing /data/johannes/template.labels:
[testng] 00:34:15,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:34:15,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:15,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_00-34-15.log]
[testng] 00:34:15,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4035c0b8 - End of configuration.
[testng] [2024-12-13 00:34:16,172] [pool-1-thread-9] Initializing /data/jcb/201108088/Haberman-Fig4A-original.am:
[testng] 00:34:16,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:34:16,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:16,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-13_00-34-16.log]
[testng] 00:34:16,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46e18d19 - End of configuration.
[testng] [2024-12-13 00:34:16,906] [pool-1-thread-8] Initializing /data/public/imagesc-50585/BF_Check.tif:
[testng] 00:34:16,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:34:16,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:16,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_00-34-16.log]
[testng] 00:34:16,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@126fac0e - End of configuration.
[testng] [2024-12-13 00:34:18,841] [pool-1-thread-7] Initializing /data/public/ignacio/test.am:
[testng] 00:34:18,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:34:18,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:18,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_00-34-18.log]
[testng] 00:34:18,843 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1239c017 - End of configuration.
[testng] [2024-12-13 00:34:19,553] [pool-1-thread-6] Initializing /data/jeremy/Hiv_spikes.am:
[testng] 00:34:19,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:34:19,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:19,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_00-34-19.log]
[testng] 00:34:19,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40dae952 - End of configuration.
[testng] [2024-12-13 00:34:20,263] [pool-1-thread-5] Initializing /data/public/imagesc-50585/BF_CheckMIB.am:
[testng] 00:34:20,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:34:20,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:20,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_00-34-20.log]
[testng] 00:34:20,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ab01f0d - End of configuration.
[testng] [2024-12-13 00:34:20,998] [pool-1-thread-4] Initializing /data/samples/emptykey/test.am:
[testng] 00:34:20,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:34:20,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:20,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_00-34-20.log]
[testng] 00:34:20,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40fe3c02 - End of configuration.
[testng] [2024-12-13 00:34:21,794] [pool-1-thread-3] Initializing /data/public/imagesc-50585/BF_CheckAmira.am:
[testng] 00:34:21,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:34:21,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:21,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_00-34-21.log]
[testng] 00:34:21,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ca9b5d4 - End of configuration.
[testng] [2024-12-13 00:34:22,554] [pool-1-thread-2] Initializing /data/johannes/template.grey:
[testng] 00:34:22,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:34:22,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:22,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_00-34-22.log]
[testng] 00:34:22,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74d7db63 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 636, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 51 seconds
Finished: SUCCESS