Started by upstream project "BIOFORMATS-test-repo" build number 289
originally caused by:
Started by upstream project "Trigger" build number 308
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins12732901189698805815.sh
+ '[' picoquant = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45655_merge_ci -v /uod/idr/repos/curated/picoquant:/data -v /uod/idr-scratch/merge-ci/curated/picoquant:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:56:38,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:56:38,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:56:38,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:56:38,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:56:38,692 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:56:38,692 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:56:38,692 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:56:38,693 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:56:38,693 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration.
[testng] 02:56:38,693 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point
[testng] 02:56:38,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 452 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-13 02:56:38,703] [main] java.version = 1.8.0_342
[testng] 02:56:38,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:56:38,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:56:39,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_02-56-38.log]
[testng] 02:56:39,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-13 02:56:39,012] [main] testng.directory = /data
[testng] [2024-12-13 02:56:39,012] [main] testng.configDirectory = /config
[testng] [2024-12-13 02:56:39,041] [main] testng.multiplier = 1.0
[testng] [2024-12-13 02:56:39,041] [main] testng.in-memory = false
[testng] [2024-12-13 02:56:39,042] [main] testng.allow-missing = false
[testng] [2024-12-13 02:56:39,042] [main] user.language = en
[testng] [2024-12-13 02:56:39,042] [main] user.country = ${user.country}
[testng] [2024-12-13 02:56:39,042] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-13 02:56:47,911] [main] ----------------------------------------
[testng] [2024-12-13 02:56:47,911] [main] Total files: 8
[testng] [2024-12-13 02:56:47,911] [main] Scan time: 8.869 s (1108 ms/file)
[testng] [2024-12-13 02:56:47,911] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 8 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-13 02:56:56,060] [pool-1-thread-1] Initializing /data/neil/PollenGrains.bin:
[testng] 02:56:56,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:56:56,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:56:56,061 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_02-56-56.log]
[testng] 02:56:56,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fa531b0 - End of configuration.
[testng] [2024-12-13 02:56:57,481] [pool-1-thread-8] Initializing /data/qa-17134/VLDLR_mGFP_with_ligand.bin:
[testng] 02:56:57,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:56:57,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:56:57,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_02-56-57.log]
[testng] 02:56:57,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a4a49ba - End of configuration.
[testng] [2024-12-13 02:56:58,759] [pool-1-thread-7] Initializing /data/qa-17095/IRF_256.bin:
[testng] 02:56:58,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:56:58,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:56:58,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_02-56-58.log]
[testng] 02:56:58,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50839e29 - End of configuration.
[testng] [2024-12-13 02:56:59,846] [pool-1-thread-6] Initializing /data/qa-9505/CENP-labelled_cells_for_FRET.bin:
[testng] 02:56:59,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:56:59,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:56:59,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_02-56-59.log]
[testng] 02:56:59,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@597cc3e7 - End of configuration.
[testng] [2024-12-13 02:57:01,190] [pool-1-thread-5] Initializing /data/neil/PollenGrains.bmp:
[testng] 02:57:01,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:57:01,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:57:01,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_02-57-01.log]
[testng] 02:57:01,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d89577d - End of configuration.
[testng] [2024-12-13 02:57:01,525] [pool-1-thread-4] Initializing /data/neil/PollenGrainsSymPhoTime.png:
[testng] 02:57:01,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:57:01,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:57:01,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_02-57-01.log]
[testng] 02:57:01,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a1fc117 - End of configuration.
[testng] [2024-12-13 02:57:01,629] [pool-1-thread-3] Initializing /data/qa-9505/GFP_and_mRFP_FRET.bin:
[testng] 02:57:01,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:57:01,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:57:01,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_02-57-01.log]
[testng] 02:57:01,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eff42c7 - End of configuration.
[testng] [2024-12-13 02:57:03,124] [pool-1-thread-2] Initializing /data/qa-9434/DaisyPollen.bin:
[testng] 02:57:03,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:57:03,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:57:03,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_02-57-03.log]
[testng] 02:57:03,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c48bf65 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 424, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 52 seconds
Finished: SUCCESS