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Started by upstream project "BIOFORMATS-test-repo" build number 289 originally caused by: Started by upstream project "Trigger" build number 308 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins5611789441660748478.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45674_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:32:56,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:32:56,735 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:32:56,735 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:32:56,736 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:32:56,736 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:32:56,737 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:32:56,737 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:32:56,737 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:32:56,737 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:32:56,738 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:32:56,738 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:32:56,738 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:32:56,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:32:56,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:32:57,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:32:57,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:32:57,010 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:32:57,010 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:32:57,010 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:32:57,011 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:32:57,011 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:32:57,011 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:32:57,011 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 274 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-13 03:32:57,021] [main] java.version = 1.8.0_342 [testng] 03:32:57,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:32:57,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:32:57,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_03-32-57.log] [testng] 03:32:57,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-13 03:32:57,075] [main] testng.directory = /data [testng] [2024-12-13 03:32:57,076] [main] testng.configDirectory = /config [testng] [2024-12-13 03:32:57,088] [main] testng.multiplier = 1.0 [testng] [2024-12-13 03:32:57,088] [main] testng.in-memory = false [testng] [2024-12-13 03:32:57,088] [main] testng.allow-missing = false [testng] [2024-12-13 03:32:57,088] [main] user.language = en [testng] [2024-12-13 03:32:57,088] [main] user.country = ${user.country} [testng] [2024-12-13 03:32:57,088] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-13 03:40:55,922] [main] ---------------------------------------- [testng] [2024-12-13 03:40:55,922] [main] Total files: 268 [testng] [2024-12-13 03:40:55,922] [main] Scan time: 478.834 s (1786 ms/file) [testng] [2024-12-13 03:40:55,922] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-13 03:53:05,811] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] 03:53:05,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:53:05,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:05,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_03-53-05.log] [testng] 03:53:05,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e98c21f - End of configuration. [testng] [2024-12-13 03:53:09,388] [pool-1-thread-12] Initializing /data/steve/TIFF/HAFF SEM: [testng] 03:53:09,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:53:09,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:09,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_03-53-09.log] [testng] 03:53:09,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2224a8c7 - End of configuration. [testng] [2024-12-13 03:53:13,219] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] 03:53:13,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:53:13,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:13,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_03-53-13.log] [testng] 03:53:13,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@731c391a - End of configuration. [testng] [2024-12-13 03:53:16,395] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] 03:53:16,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:53:16,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:16,396 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_03-53-16.log] [testng] 03:53:16,396 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c3dc7e9 - End of configuration. [testng] [2024-12-13 03:53:17,449] [pool-1-thread-9] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] 03:53:17,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:53:17,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:17,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-13_03-53-17.log] [testng] 03:53:17,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ccd340d - End of configuration. [testng] [2024-12-13 03:53:18,432] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 03:53:18,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:53:18,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:18,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_03-53-18.log] [testng] 03:53:18,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@568ab13b - End of configuration. [testng] [2024-12-13 03:53:19,460] [pool-1-thread-7] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] 03:53:19,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:53:19,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:19,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_03-53-19.log] [testng] 03:53:19,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e69e37b - End of configuration. [testng] [2024-12-13 03:53:23,196] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] 03:53:23,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:53:23,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:23,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_03-53-23.log] [testng] 03:53:23,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cf0bffb - End of configuration. [testng] [2024-12-13 03:53:24,173] [pool-1-thread-5] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] 03:53:24,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:53:24,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:24,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_03-53-24.log] [testng] 03:53:24,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@541b9c2b - End of configuration. [testng] [2024-12-13 03:53:25,877] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] 03:53:25,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:53:25,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:25,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_03-53-25.log] [testng] 03:53:25,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13dc5b3c - End of configuration. [testng] [2024-12-13 03:53:27,217] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] 03:53:27,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:53:27,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:27,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_03-53-27.log] [testng] 03:53:27,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2319f25e - End of configuration. [testng] [2024-12-13 03:53:28,920] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] 03:53:28,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:53:28,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:28,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_03-53-28.log] [testng] 03:53:28,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1314fad9 - End of configuration. [testng] [2024-12-13 03:53:40,099] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-12-13 03:53:41,343] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-12-13 03:53:43,146] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-12-13 03:53:45,301] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-12-13 03:53:49,628] [pool-1-thread-10] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-12-13 03:53:54,421] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-12-13 03:53:55,916] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-12-13 03:54:04,082] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-12-13 03:54:04,839] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-12-13 03:54:06,204] [pool-1-thread-6] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-12-13 03:54:09,827] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-12-13 03:54:11,300] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-12-13 03:54:12,615] [pool-1-thread-1] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-12-13 03:54:13,310] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-12-13 03:54:16,973] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-12-13 03:54:18,262] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-12-13 03:54:20,064] [pool-1-thread-11] Initializing /data/steve/FITS/M51.fits: [testng] [2024-12-13 03:54:22,872] [pool-1-thread-2] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-12-13 03:54:24,012] [pool-1-thread-4] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-12-13 03:54:26,526] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-12-13 03:54:28,436] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-12-13 03:54:29,711] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-12-13 03:54:33,804] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-12-13 03:54:34,897] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-12-13 03:54:38,832] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-12-13 03:54:39,710] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-12-13 03:54:40,458] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-12-13 03:54:42,277] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-12-13 03:54:43,621] [pool-1-thread-4] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-12-13 03:54:47,402] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-12-13 03:54:49,466] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-12-13 03:54:53,683] [pool-1-thread-3] Initializing /data/steve/FITS/M104.fits: [testng] [2024-12-13 03:54:54,100] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-12-13 03:54:55,910] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-12-13 03:54:57,324] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-12-13 03:54:58,611] [pool-1-thread-5] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-12-13 03:55:02,738] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-12-13 03:55:04,510] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-12-13 03:55:06,803] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-12-13 03:55:08,782] [pool-1-thread-6] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-12-13 03:55:11,806] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-12-13 03:55:12,710] [pool-1-thread-8] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-12-13 03:55:17,881] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-12-13 03:55:19,562] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-12-13 03:55:22,885] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-12-13 03:55:28,304] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-12-13 03:55:33,537] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-12-13 03:55:35,503] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-12-13 03:55:39,604] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-12-13 03:55:40,765] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-12-13 03:55:42,180] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-12-13 03:55:46,941] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-12-13 03:55:47,931] [pool-1-thread-10] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-12-13 03:55:51,792] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-12-13 03:55:54,214] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-12-13 03:55:55,844] [pool-1-thread-7] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-12-13 03:55:57,110] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-12-13 03:55:58,616] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-12-13 03:56:03,239] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-12-13 03:56:04,370] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-12-13 03:56:05,985] [pool-1-thread-9] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-12-13 03:56:13,942] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-12-13 03:56:15,571] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-12-13 03:56:16,407] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-12-13 03:56:17,596] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-12-13 03:56:18,690] [pool-1-thread-1] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-12-13 03:56:20,406] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-12-13 03:56:21,010] [pool-1-thread-12] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-12-13 03:56:24,789] [pool-1-thread-7] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-12-13 03:56:26,689] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-12-13 03:56:30,407] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-12-13 03:56:32,686] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-12-13 03:56:35,501] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-12-13 03:56:37,370] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-12-13 03:56:39,696] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-12-13 03:56:41,618] [pool-1-thread-10] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-12-13 03:56:46,054] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-12-13 03:56:50,398] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-12-13 03:56:50,903] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-12-13 03:56:52,034] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-12-13 03:56:53,171] [pool-1-thread-9] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-12-13 03:56:55,452] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-12-13 03:57:01,078] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-12-13 03:57:05,336] [pool-1-thread-11] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-12-13 03:57:08,297] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-12-13 03:57:12,586] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-12-13 03:57:18,155] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-12-13 03:57:18,927] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-12-13 03:57:20,000] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-12-13 03:57:21,120] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-12-13 03:57:22,052] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-12-13 03:57:26,134] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-12-13 03:57:30,493] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-12-13 03:57:31,569] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-12-13 03:57:34,269] [pool-1-thread-8] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-12-13 03:57:38,347] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-12-13 03:57:42,353] [pool-1-thread-5] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-12-13 03:57:46,094] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-12-13 03:57:47,169] [pool-1-thread-12] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-12-13 03:57:51,063] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-12-13 03:57:52,675] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-12-13 03:57:55,112] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-12-13 03:57:56,668] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-12-13 03:57:59,077] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-12-13 03:58:00,197] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-12-13 03:58:04,899] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-12-13 03:58:09,020] [pool-1-thread-2] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-12-13 03:58:13,368] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-12-13 03:58:20,031] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-12-13 03:58:23,999] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-12-13 03:58:25,112] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-12-13 03:58:28,800] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-12-13 03:58:29,964] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-12-13 03:58:31,200] [pool-1-thread-8] Initializing /data/steve/FITS/M13.fits: [testng] [2024-12-13 03:58:31,527] [pool-1-thread-5] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-12-13 03:58:33,055] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-12-13 03:58:36,709] [pool-1-thread-6] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-12-13 03:58:40,144] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-12-13 03:58:42,031] [pool-1-thread-9] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-12-13 03:58:47,996] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-12-13 03:58:51,207] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-12-13 03:58:53,696] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-12-13 03:58:55,019] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-12-13 03:58:56,377] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-12-13 03:58:57,490] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-12-13 03:58:58,624] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-12-13 03:58:59,731] [pool-1-thread-1] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-12-13 03:59:00,067] [pool-1-thread-11] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-12-13 03:59:03,958] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-12-13 03:59:07,594] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-12-13 03:59:09,495] [pool-1-thread-3] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-12-13 03:59:10,555] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-12-13 03:59:11,493] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-12-13 03:59:12,064] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-12-13 03:59:13,212] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-12-13 03:59:14,713] [pool-1-thread-9] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-12-13 03:59:17,999] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-12-13 03:59:21,250] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-12-13 03:59:22,400] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-12-13 03:59:29,266] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-12-13 03:59:31,385] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-12-13 03:59:35,268] [pool-1-thread-11] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-12-13 03:59:37,510] [pool-1-thread-3] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-12-13 03:59:44,904] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-12-13 03:59:47,011] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-12-13 03:59:51,783] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-12-13 04:00:00,025] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-12-13 04:00:01,776] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 27 minutes 41 seconds Finished: SUCCESS