Started by upstream project "BIOFORMATS-test-repo" build number 289
originally caused by:
 Started by upstream project "Trigger" build number 308
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins14684012791688856889.sh
+ '[' cellomics = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45689_merge_ci -v /uod/idr/repos/curated/cellomics:/data -v /uod/idr-scratch/merge-ci/curated/cellomics:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 05:14:21,755 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 05:14:21,757 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
   [testng] 05:14:21,757 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:14:21,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:14:21,758 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 05:14:21,758 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 05:14:21,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 05:14:21,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:14:21,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:14:21,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 05:14:21,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 05:14:21,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 05:14:21,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 05:14:21,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 05:14:21,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 05:14:21,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 05:14:22,004 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 05:14:22,004 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 05:14:22,005 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 05:14:22,005 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 05:14:22,005 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
   [testng] 05:14:22,006 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
   [testng] 05:14:22,007 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 248 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-13 05:14:22,020] [main] java.version = 1.8.0_342
   [testng] 05:14:22,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 05:14:22,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:14:22,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_05-14-22.log]
   [testng] 05:14:22,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
   [testng] [2024-12-13 05:14:22,072] [main] testng.directory = /data
   [testng] [2024-12-13 05:14:22,072] [main] testng.configDirectory = /config
   [testng] [2024-12-13 05:14:22,083] [main] testng.multiplier = 1.0
   [testng] [2024-12-13 05:14:22,083] [main] testng.in-memory = false
   [testng] [2024-12-13 05:14:22,083] [main] testng.allow-missing = false
   [testng] [2024-12-13 05:14:22,083] [main] user.language = en
   [testng] [2024-12-13 05:14:22,083] [main] user.country = ${user.country}
   [testng] [2024-12-13 05:14:22,083] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-12-13 05:15:32,712] [main] ----------------------------------------
   [testng] [2024-12-13 05:15:32,712] [main] Total files: 2539
   [testng] [2024-12-13 05:15:32,712] [main] Scan time: 70.629 s (27 ms/file)
   [testng] [2024-12-13 05:15:32,712] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-13 05:16:56,830] [pool-1-thread-1] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00o1.C01: 
   [testng] 05:16:56,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 05:16:56,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:16:56,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_05-16-56.log]
   [testng] 05:16:56,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df0c6fd - End of configuration.
   [testng] [2024-12-13 05:16:57,970] [pool-1-thread-12] Initializing /data/lee/icd002235_090127090001_a01f00d1.c01: 
   [testng] 05:16:57,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 05:16:57,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:16:57,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_05-16-57.log]
   [testng] 05:16:57,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff332e2 - End of configuration.
   [testng] [2024-12-13 05:16:59,090] [pool-1-thread-11] Initializing /data/samples/different-field-count/plate_B03f00d0.C01: 
   [testng] 05:16:59,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 05:16:59,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:16:59,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_05-16-59.log]
   [testng] 05:16:59,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68624647 - End of configuration.
   [testng] [2024-12-13 05:17:00,162] [pool-1-thread-10] Initializing /data/lee/AS_09125_050116030001_D03f00d0.DIB: 
   [testng] 05:17:00,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 05:17:00,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:17:00,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_05-17-00.log]
   [testng] 05:17:00,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f6a6c72 - End of configuration.
   [testng] [2024-12-13 05:17:01,095] [pool-1-thread-9] Initializing /data/harri/MFGTMP-PC_111018140003/MFGTMP-PC_111018140003_E04f00d0.C01: 
   [testng] 05:17:01,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 05:17:01,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:17:01,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-13_05-17-01.log]
   [testng] 05:17:01,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d15b008 - End of configuration.
   [testng] [2024-12-13 05:17:02,227] [pool-1-thread-8] Initializing /data/qa-21720/AS_09125_050117190001_A14f00d0.DIB: 
   [testng] 05:17:02,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 05:17:02,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:17:02,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_05-17-02.log]
   [testng] 05:17:02,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@607fd980 - End of configuration.
   [testng] [2024-12-13 05:17:03,398] [pool-1-thread-7] Initializing /data/johannes/MFGTMP_081128200001_A02f239d1.C01: 
   [testng] 05:17:03,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 05:17:03,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:17:03,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_05-17-03.log]
   [testng] 05:17:03,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f0da1c1 - End of configuration.
   [testng] [2024-12-13 05:17:04,511] [pool-1-thread-6] Initializing /data/johannes/MFGTMP_081222130005_E07f00d0.C01: 
   [testng] 05:17:04,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 05:17:04,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:17:04,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_05-17-04.log]
   [testng] 05:17:04,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e4ed7eb - End of configuration.
   [testng] [2024-12-13 05:17:05,604] [pool-1-thread-5] Initializing /data/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01: 
   [testng] 05:17:05,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 05:17:05,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:17:05,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_05-17-05.log]
   [testng] 05:17:05,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d566e42 - End of configuration.
   [testng] [2024-12-13 05:17:06,863] [pool-1-thread-4] Initializing /data/omar/FB03f00d1.C01: 
   [testng] 05:17:06,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 05:17:06,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:17:06,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_05-17-06.log]
   [testng] 05:17:06,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b1e57e4 - End of configuration.
   [testng] [2024-12-13 05:17:07,970] [pool-1-thread-3] Initializing /data/public/BBBC001/AS_09125_050118150001_A03f00d0.DIB: 
   [testng] 05:17:07,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 05:17:07,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:17:07,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_05-17-07.log]
   [testng] 05:17:07,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d3cd84 - End of configuration.
   [testng] [2024-12-13 05:17:09,013] [pool-1-thread-2] Initializing /data/omar/FB03f00o2.C01: 
   [testng] 05:17:09,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 05:17:09,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:17:09,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_05-17-09.log]
   [testng] 05:17:09,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d2268eb - End of configuration.
   [testng] [2024-12-13 05:17:18,813] [pool-1-thread-10] Initializing /data/omar/FB03f00o1.C01: 
   [testng] [2024-12-13 05:17:28,159] [pool-1-thread-12] Initializing /data/samples/sparse-plate/plate_E03f00d0.C01: 
   [testng] [2024-12-13 05:17:29,405] [pool-1-thread-6] Initializing /data/omar/FB03f00d0.C01: 
   [testng] [2024-12-13 05:17:30,696] [pool-1-thread-4] Initializing /data/omar/FB03f03o2.DIB: 
   [testng] [2024-12-13 05:17:31,980] [pool-1-thread-2] Initializing /data/samples/plate-size/plate_B03f00d0.C01: 
   [testng] 06:22:32,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 06:22:32,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 06:22:32,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_06-22-32.log]
   [testng] 06:22:32,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@732c9b5c - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 68 minutes 13 seconds
Finished: SUCCESS