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Started by upstream project "BIOFORMATS-test-repo" build number 289 originally caused by: Started by upstream project "Trigger" build number 308 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17632786096097686207.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45714_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 06:33:26,733 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:33:26,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 06:33:26,734 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:33:26,735 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:33:26,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:33:26,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:33:26,736 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:33:26,736 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:33:26,736 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:33:26,736 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:33:26,736 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:33:26,736 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:33:26,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:33:26,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:33:26,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:33:26,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:33:26,980 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:33:26,980 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:33:26,980 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:33:26,980 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:33:26,981 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 06:33:26,981 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 06:33:26,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 245 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-13 06:33:26,990] [main] java.version = 1.8.0_342 [testng] 06:33:26,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:33:26,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:33:27,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_06-33-27.log] [testng] 06:33:27,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-13 06:33:27,039] [main] testng.directory = /data [testng] [2024-12-13 06:33:27,039] [main] testng.configDirectory = /config [testng] [2024-12-13 06:33:27,050] [main] testng.multiplier = 1.0 [testng] [2024-12-13 06:33:27,051] [main] testng.in-memory = false [testng] [2024-12-13 06:33:27,051] [main] testng.allow-missing = false [testng] [2024-12-13 06:33:27,051] [main] user.language = en [testng] [2024-12-13 06:33:27,051] [main] user.country = ${user.country} [testng] [2024-12-13 06:33:27,051] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-13 06:35:55,614] [main] ---------------------------------------- [testng] [2024-12-13 06:35:55,614] [main] Total files: 15735 [testng] [2024-12-13 06:35:55,614] [main] Scan time: 148.563 s (9 ms/file) [testng] [2024-12-13 06:35:55,614] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-13 06:40:56,276] [pool-1-thread-1] Initializing /data/converted/converted/mri-stack.tif: [testng] 06:40:56,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:40:56,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:56,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-13_06-40-56.log] [testng] 06:40:56,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@238735c2 - End of configuration. [testng] [2024-12-13 06:40:58,740] [pool-1-thread-12] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] 06:40:58,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:40:58,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:40:58,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_06-40-58.log] [testng] 06:40:58,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@668c90a0 - End of configuration. [testng] [2024-12-13 06:41:01,268] [pool-1-thread-11] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] 06:41:01,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:41:01,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:41:01,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_06-41-01.log] [testng] 06:41:01,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31455582 - End of configuration. [testng] [2024-12-13 06:41:03,605] [pool-1-thread-10] Initializing /data/converted/kelsey/432x342BW.tif: [testng] 06:41:03,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:41:03,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:41:03,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_06-41-03.log] [testng] 06:41:03,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6411f5f7 - End of configuration. [testng] [2024-12-13 06:41:05,973] [pool-1-thread-9] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] 06:41:05,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:41:05,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:41:05,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-13_06-41-05.log] [testng] 06:41:05,974 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26e5ce32 - End of configuration. [testng] [2024-12-13 06:41:08,843] [pool-1-thread-8] Initializing /data/converted/converted/2chz.tif: [testng] 06:41:08,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:41:08,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:41:08,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-13_06-41-08.log] [testng] 06:41:08,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32d53841 - End of configuration. [testng] [2024-12-13 06:41:12,009] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] 06:41:12,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:41:12,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:41:12,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-13_06-41-12.log] [testng] 06:41:12,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32f259f5 - End of configuration. [testng] [2024-12-13 06:41:14,506] [pool-1-thread-6] Initializing /data/converted/dietmar/138.tif: [testng] 06:41:14,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:41:14,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:41:14,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-13_06-41-14.log] [testng] 06:41:14,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ea66f6b - End of configuration. [testng] [2024-12-13 06:41:18,012] [pool-1-thread-5] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 06:41:18,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:41:18,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:41:18,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-13_06-41-18.log] [testng] 06:41:18,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@346d2371 - End of configuration. [testng] [2024-12-13 06:41:23,307] [pool-1-thread-4] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] 06:41:23,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:41:23,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:41:23,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-13_06-41-23.log] [testng] 06:41:23,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28bbe160 - End of configuration. [testng] [2024-12-13 06:41:26,608] [pool-1-thread-3] Initializing /data/converted/kelsey/650x514BW.tif: [testng] 06:41:26,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:41:26,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:41:26,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_06-41-26.log] [testng] 06:41:26,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7010a697 - End of configuration. [testng] [2024-12-13 06:41:29,178] [pool-1-thread-2] Initializing /data/converted/converted/damian.tif: [testng] 06:41:29,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:41:29,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:41:29,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_06-41-29.log] [testng] 06:41:29,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@293a2d74 - End of configuration. [testng] [2024-12-13 06:42:28,435] [pool-1-thread-1] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-12-13 06:42:32,132] [pool-1-thread-10] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-12-13 06:42:36,480] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-12-13 06:42:41,004] [pool-1-thread-3] Initializing /data/scott/Slide133-04.tif: [testng] [2024-12-13 06:43:41,216] [pool-1-thread-1] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-12-13 06:43:50,331] [pool-1-thread-3] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-12-13 06:44:51,285] [pool-1-thread-12] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-12-13 06:45:05,059] [pool-1-thread-3] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-12-13 06:45:25,648] [pool-1-thread-1] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-12-13 06:49:32,601] [pool-1-thread-8] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-12-13 06:50:50,960] [pool-1-thread-11] Initializing /data/scott/Slide133-11.tif: [testng] [2024-12-13 06:51:02,419] [pool-1-thread-4] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-12-13 06:51:07,582] [pool-1-thread-8] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-12-13 06:52:06,364] [pool-1-thread-11] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-12-13 06:52:29,423] [pool-1-thread-4] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-12-13 06:53:12,072] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-12-13 06:53:20,290] [pool-1-thread-8] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-12-13 06:53:55,297] [pool-1-thread-10] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-12-13 06:54:22,344] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-12-13 06:57:57,932] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-12-13 06:58:56,522] [pool-1-thread-9] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-12-13 06:59:15,207] [pool-1-thread-7] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-12-13 06:59:59,256] [pool-1-thread-9] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-12-13 07:00:21,371] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-12-13 07:00:39,560] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-12-13 07:02:29,234] [pool-1-thread-2] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-12-13 07:06:11,510] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] [2024-12-13 07:08:54,883] [pool-1-thread-9] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-12-13 07:11:34,159] [pool-1-thread-1] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-12-13 07:12:22,138] [pool-1-thread-11] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-12-13 07:15:16,819] [pool-1-thread-4] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-12-13 07:16:19,988] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-12-13 07:16:47,131] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-12-13 07:17:51,034] [pool-1-thread-4] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-12-13 07:19:20,185] [pool-1-thread-7] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-12-13 07:21:08,039] [pool-1-thread-11] Initializing /data/scott/Slide133-01.tif: [testng] [2024-12-13 07:21:45,297] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-12-13 07:22:08,092] [pool-1-thread-6] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-12-13 07:22:12,598] [pool-1-thread-11] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-12-13 07:23:14,225] [pool-1-thread-6] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-12-13 07:34:15,766] [pool-1-thread-6] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-12-13 07:35:47,587] [pool-1-thread-6] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-12-13 07:40:27,012] [pool-1-thread-5] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-12-13 07:42:00,001] [pool-1-thread-7] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-12-13 07:43:35,915] [pool-1-thread-2] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-12-13 07:44:07,356] [pool-1-thread-7] Initializing /data/converted/dietmar/137.tif: [testng] [2024-12-13 07:45:02,667] [pool-1-thread-2] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-12-13 07:45:11,222] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-12-13 07:51:36,526] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-12-13 07:57:22,681] [pool-1-thread-5] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-12-13 07:59:58,936] [pool-1-thread-9] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] 08:00:43,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:00:43,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:00:43,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-13_08-00-43.log] [testng] 08:00:43,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c2739b3 - End of configuration. [testng] [2024-12-13 08:01:00,575] [pool-1-thread-4] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-12-13 08:03:30,560] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-12-13 08:04:13,901] [pool-1-thread-8] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-12-13 08:06:14,369] [pool-1-thread-9] Initializing /data/converted/sebastien/test.tif: [testng] [2024-12-13 08:09:18,128] [pool-1-thread-1] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-12-13 08:09:53,341] [pool-1-thread-3] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-12-13 08:12:12,358] [pool-1-thread-8] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] 08:13:59,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:13:59,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:13:59,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-13_08-13-59.log] [testng] 08:13:59,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47894cfe - End of configuration. [testng] [2024-12-13 08:14:46,626] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-12-13 08:17:55,854] [pool-1-thread-8] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-12-13 08:22:56,947] [pool-1-thread-7] Initializing /data/converted/michel/c.tif: [testng] [2024-12-13 08:23:14,153] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-12-13 08:24:35,963] [pool-1-thread-7] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-12-13 08:24:40,341] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-12-13 08:25:16,243] [pool-1-thread-4] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-12-13 08:25:50,688] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-12-13 08:26:33,346] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-12-13 08:26:37,035] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-12-13 08:28:09,798] [pool-1-thread-9] Initializing /data/converted/michel/e.tif: [testng] [2024-12-13 08:28:23,640] [pool-1-thread-3] Initializing /data/converted/nicolas/image.tif: [testng] [2024-12-13 08:29:21,295] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-12-13 08:30:30,296] [pool-1-thread-9] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-12-13 08:32:05,047] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-12-13 08:33:24,401] [pool-1-thread-1] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-12-13 08:38:52,763] [pool-1-thread-1] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-12-13 08:39:54,088] [pool-1-thread-1] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-12-13 08:41:33,718] [pool-1-thread-8] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-12-13 08:41:48,404] [pool-1-thread-1] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-12-13 08:41:55,582] [pool-1-thread-5] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-12-13 08:41:59,273] [pool-1-thread-6] Initializing /data/converted/michel/a.tif: [testng] [2024-12-13 08:42:31,227] [pool-1-thread-8] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-12-13 08:42:49,152] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-12-13 08:43:16,846] [pool-1-thread-1] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-12-13 08:43:44,037] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-12-13 08:43:48,554] [pool-1-thread-8] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-12-13 08:44:11,360] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-12-13 08:44:16,338] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-12-13 08:44:50,436] [pool-1-thread-4] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-12-13 08:45:16,474] [pool-1-thread-8] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-12-13 08:45:53,368] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-12-13 08:46:28,436] [pool-1-thread-8] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-12-13 08:47:47,621] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-12-13 08:49:18,611] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-12-13 08:50:20,331] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] 08:56:17,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:56:17,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:56:17,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-13_08-56-17.log] [testng] 08:56:17,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ee0e7c8 - End of configuration. [testng] 08:57:31,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:57:31,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:57:31,896 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-13_08-57-31.log] [testng] 08:57:31,896 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c5fd65e - End of configuration. [testng] [2024-12-13 08:58:44,298] [pool-1-thread-8] Initializing /data/converted/michel/b.tif: [testng] [2024-12-13 08:59:25,048] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-12-13 09:00:08,563] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-12-13 09:01:07,107] [pool-1-thread-1] Initializing /data/converted/michel/d.tif: [testng] [2024-12-13 09:01:40,316] [pool-1-thread-8] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-12-13 09:01:47,118] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-12-13 09:02:17,358] [pool-1-thread-1] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-12-13 09:02:41,985] [pool-1-thread-8] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-12-13 09:03:03,471] [pool-1-thread-3] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-12-13 09:03:10,274] [pool-1-thread-8] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-12-13 09:03:43,986] [pool-1-thread-1] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-12-13 09:03:47,438] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-12-13 09:03:57,003] [pool-1-thread-4] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-12-13 09:04:36,307] [pool-1-thread-6] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-12-13 09:04:54,631] [pool-1-thread-10] Initializing /data/scott/Slide133-08.tif: [testng] [2024-12-13 09:05:27,650] [pool-1-thread-6] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-12-13 09:05:50,793] [pool-1-thread-10] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-12-13 09:05:54,011] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-12-13 09:06:10,928] [pool-1-thread-9] Initializing /data/converted/lior/live+cf5b.tif: [testng] 10:36:01,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:36:01,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:36:01,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-13_10-36-01.log] [testng] 10:36:01,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ac9b5fe - End of configuration. [testng] 10:40:54,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:40:54,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:40:54,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-13_10-40-54.log] [testng] 10:40:54,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e84be9b - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 247 minutes 32 seconds Finished: SUCCESS