Started by upstream project "BIOFORMATS-test-repo" build number 290
originally caused by:
Started by upstream project "Trigger" build number 309
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins11610837652943633335.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45777_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:40:48,706 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:40:48,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 00:40:48,708 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:40:48,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:40:48,709 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:40:48,710 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:40:48,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:40:48,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:40:48,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:40:48,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:40:48,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:40:48,712 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:40:48,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:40:48,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:40:48,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:40:48,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:40:48,902 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:40:48,903 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:40:48,903 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:40:48,903 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:40:48,903 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 00:40:48,904 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 00:40:48,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-14 00:40:48,913] [main] java.version = 11.0.16
[testng] 00:40:48,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:40:48,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:48,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-14_00-40-48.log]
[testng] 00:40:48,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-12-14 00:40:48,960] [main] testng.directory = /data
[testng] [2024-12-14 00:40:48,961] [main] testng.configDirectory = /config
[testng] [2024-12-14 00:40:48,970] [main] testng.multiplier = 1.0
[testng] [2024-12-14 00:40:48,971] [main] testng.in-memory = false
[testng] [2024-12-14 00:40:48,971] [main] testng.allow-missing = false
[testng] [2024-12-14 00:40:48,971] [main] user.language = en
[testng] [2024-12-14 00:40:48,971] [main] user.country = ${user.country}
[testng] [2024-12-14 00:40:48,971] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-14 00:40:59,621] [main] ----------------------------------------
[testng] [2024-12-14 00:40:59,621] [main] Total files: 21
[testng] [2024-12-14 00:40:59,621] [main] Scan time: 10.648 s (507 ms/file)
[testng] [2024-12-14 00:40:59,621] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-14 00:41:41,725] [pool-1-thread-1] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 00:41:41,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:41:41,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:41,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-14_00-41-41.log]
[testng] 00:41:41,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fde9db2 - End of configuration.
[testng] [2024-12-14 00:41:43,487] [pool-1-thread-12] Initializing /data/venu/VENU_Four.TIF:
[testng] 00:41:43,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:41:43,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:43,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-14_00-41-43.log]
[testng] 00:41:43,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e12d672 - End of configuration.
[testng] [2024-12-14 00:41:45,905] [pool-1-thread-11] Initializing /data/venu/VENU02.IMG:
[testng] 00:41:45,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:41:45,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:45,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-14_00-41-45.log]
[testng] 00:41:45,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72955eaa - End of configuration.
[testng] [2024-12-14 00:41:46,463] [pool-1-thread-10] Initializing /data/venu/VENU.TIF:
[testng] 00:41:46,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:41:46,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:46,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-14_00-41-46.log]
[testng] 00:41:46,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b2d93ed - End of configuration.
[testng] [2024-12-14 00:41:48,236] [pool-1-thread-9] Initializing /data/venu/VENU_Five.TIF:
[testng] 00:41:48,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:41:48,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:48,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-14_00-41-48.log]
[testng] 00:41:48,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b673677 - End of configuration.
[testng] [2024-12-14 00:41:49,980] [pool-1-thread-8] Initializing /data/venu/VENU_Eight.TIF:
[testng] 00:41:49,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:41:49,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:49,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-14_00-41-49.log]
[testng] 00:41:49,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bdd8e78 - End of configuration.
[testng] [2024-12-14 00:41:51,770] [pool-1-thread-7] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] 00:41:51,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:41:51,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:51,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-14_00-41-51.log]
[testng] 00:41:51,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47d1c76a - End of configuration.
[testng] [2024-12-14 00:41:53,826] [pool-1-thread-6] Initializing /data/venu/VENU01.IMG:
[testng] 00:41:53,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:41:53,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:53,827 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-14_00-41-53.log]
[testng] 00:41:53,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e7952f - End of configuration.
[testng] [2024-12-14 00:41:54,385] [pool-1-thread-5] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] 00:41:54,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:41:54,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:54,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-14_00-41-54.log]
[testng] 00:41:54,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d909b53 - End of configuration.
[testng] [2024-12-14 00:41:56,078] [pool-1-thread-4] Initializing /data/venu/VENU03.TIF:
[testng] 00:41:56,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:41:56,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:56,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-14_00-41-56.log]
[testng] 00:41:56,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42b10f11 - End of configuration.
[testng] [2024-12-14 00:41:58,053] [pool-1-thread-3] Initializing /data/venu/VENU02.TIF:
[testng] 00:41:58,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:41:58,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:58,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-14_00-41-58.log]
[testng] 00:41:58,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f26f3e1 - End of configuration.
[testng] [2024-12-14 00:41:59,744] [pool-1-thread-2] Initializing /data/venu/VENU03.IMG:
[testng] 00:41:59,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:41:59,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:41:59,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-14_00-41-59.log]
[testng] 00:41:59,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f0e9246 - End of configuration.
[testng] [2024-12-14 00:42:07,397] [pool-1-thread-6] Initializing /data/venu/VENU_Six.TIF:
[testng] [2024-12-14 00:42:09,785] [pool-1-thread-2] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] [2024-12-14 00:42:11,451] [pool-1-thread-11] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] [2024-12-14 00:42:18,974] [pool-1-thread-9] Initializing /data/steffen/Batman_008.tif:
[testng] [2024-12-14 00:42:20,871] [pool-1-thread-10] Initializing /data/venu/VENU_Seven.TIF:
[testng] [2024-12-14 00:42:23,677] [pool-1-thread-12] Initializing /data/venu/VENU01.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 50 seconds
Finished: SUCCESS