Started by upstream project "BIOFORMATS-test-repo" build number 290
originally caused by:
Started by upstream project "Trigger" build number 309
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15213524263045676173.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45800_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 01:31:48,384 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:31:48,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 01:31:48,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:31:48,387 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:31:48,387 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:31:48,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:31:48,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:31:48,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:31:48,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:31:48,389 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:31:48,389 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:31:48,389 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:31:48,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:31:48,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:31:48,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:31:48,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:31:48,582 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:31:48,583 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:31:48,583 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:31:48,583 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:31:48,583 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 01:31:48,584 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 01:31:48,584 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-14 01:31:48,593] [main] java.version = 11.0.16
[testng] 01:31:48,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:31:48,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:48,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-14_01-31-48.log]
[testng] 01:31:48,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-12-14 01:31:48,641] [main] testng.directory = /data
[testng] [2024-12-14 01:31:48,641] [main] testng.configDirectory = /config
[testng] [2024-12-14 01:31:48,651] [main] testng.multiplier = 1.0
[testng] [2024-12-14 01:31:48,652] [main] testng.in-memory = false
[testng] [2024-12-14 01:31:48,652] [main] testng.allow-missing = false
[testng] [2024-12-14 01:31:48,652] [main] user.language = en
[testng] [2024-12-14 01:31:48,652] [main] user.country = ${user.country}
[testng] [2024-12-14 01:31:48,652] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-14 01:31:49,279] [main] ----------------------------------------
[testng] [2024-12-14 01:31:49,279] [main] Total files: 25
[testng] [2024-12-14 01:31:49,279] [main] Scan time: 0.627 s (25 ms/file)
[testng] [2024-12-14 01:31:49,279] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-14 01:32:13,554] [pool-1-thread-1] Initializing /data/brian/images/TRU256.PCT:
[testng] 01:32:13,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:32:13,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:13,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-14_01-32-13.log]
[testng] 01:32:13,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@caa459b - End of configuration.
[testng] [2024-12-14 01:32:14,444] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] 01:32:14,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:32:14,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:14,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-14_01-32-14.log]
[testng] 01:32:14,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f560e06 - End of configuration.
[testng] [2024-12-14 01:32:15,324] [pool-1-thread-11] Initializing /data/brian/images/YEL.PCT:
[testng] 01:32:15,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:32:15,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:15,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-14_01-32-15.log]
[testng] 01:32:15,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f9b40ef - End of configuration.
[testng] [2024-12-14 01:32:16,103] [pool-1-thread-10] Initializing /data/misc/swlogo.pict:
[testng] 01:32:16,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:32:16,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:16,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-14_01-32-16.log]
[testng] 01:32:16,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35f8188a - End of configuration.
[testng] [2024-12-14 01:32:16,903] [pool-1-thread-9] Initializing /data/brian/images/FLAG_B32.pct:
[testng] 01:32:16,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:32:16,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:16,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-14_01-32-16.log]
[testng] 01:32:16,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7152d494 - End of configuration.
[testng] [2024-12-14 01:32:17,818] [pool-1-thread-8] Initializing /data/misc/planet.png:
[testng] 01:32:17,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:32:17,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:17,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-14_01-32-17.log]
[testng] 01:32:17,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6de30792 - End of configuration.
[testng] [2024-12-14 01:32:17,912] [pool-1-thread-7] Initializing /data/jqd/sixteenBit.pict:
[testng] 01:32:17,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:32:17,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:17,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-14_01-32-17.log]
[testng] 01:32:17,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37c7e6ef - End of configuration.
[testng] [2024-12-14 01:32:18,705] [pool-1-thread-6] Initializing /data/jqd/mire32.pict:
[testng] 01:32:18,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:32:18,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:18,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-14_01-32-18.log]
[testng] 01:32:18,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2af77d17 - End of configuration.
[testng] [2024-12-14 01:32:19,467] [pool-1-thread-5] Initializing /data/jqd/mireSixteen.pict:
[testng] 01:32:19,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:32:19,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:19,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-14_01-32-19.log]
[testng] 01:32:19,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65f17f60 - End of configuration.
[testng] [2024-12-14 01:32:20,118] [pool-1-thread-4] Initializing /data/brian/images/WHT.PCT:
[testng] 01:32:20,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:32:20,119 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:20,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-14_01-32-20.log]
[testng] 01:32:20,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a0e7e31 - End of configuration.
[testng] [2024-12-14 01:32:20,837] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] 01:32:20,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:32:20,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:20,838 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-14_01-32-20.log]
[testng] 01:32:20,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3915a9cc - End of configuration.
[testng] [2024-12-14 01:32:21,648] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] 01:32:21,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:32:21,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:21,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-14_01-32-21.log]
[testng] 01:32:21,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bf9af9c - End of configuration.
[testng] [2024-12-14 01:32:27,694] [pool-1-thread-8] Initializing /data/misc/planet2.pict:
[testng] [2024-12-14 01:32:32,403] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] [2024-12-14 01:32:33,543] [pool-1-thread-1] Initializing /data/jqd/32bit.pict:
[testng] [2024-12-14 01:32:34,568] [pool-1-thread-7] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-12-14 01:32:35,547] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-12-14 01:32:36,430] [pool-1-thread-4] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] [2024-12-14 01:32:37,456] [pool-1-thread-6] Initializing /data/wayne/PotatoMeristem.pict:
[testng] [2024-12-14 01:32:38,380] [pool-1-thread-10] Initializing /data/brian/images/GRN.PCT:
[testng] [2024-12-14 01:32:39,269] [pool-1-thread-12] Initializing /data/brian/images/BLK.PCT:
[testng] [2024-12-14 01:32:40,307] [pool-1-thread-9] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-12-14 01:32:41,493] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT:
[testng] [2024-12-14 01:32:42,724] [pool-1-thread-3] Initializing /data/misc/planet.pict:
[testng] [2024-12-14 01:32:48,982] [pool-1-thread-8] Initializing /data/brian/images/VENUS.pct:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 13 seconds
Finished: SUCCESS