Started by upstream project "BIOFORMATS-test-repo" build number 291
originally caused by:
Started by upstream project "Trigger" build number 310
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2216675972770935836.sh
+ '[' zip = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45935_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:30:30,610 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:30:30,611 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:30:30,611 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:30:30,612 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:30:30,612 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:30:30,613 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:30:30,613 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:30:30,613 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:30:30,614 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:30:30,614 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:30:30,614 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:30:30,615 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:30:30,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:30:30,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:30:30,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:30:30,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:30:30,805 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:30:30,805 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:30:30,805 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:30:30,806 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:30:30,806 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:30:30,806 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:30:30,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-15 00:30:30,815] [main] java.version = 17.0.2
[testng] 00:30:30,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:30:30,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:30,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_00-30-30.log]
[testng] 00:30:30,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-15 00:30:30,862] [main] testng.directory = /data
[testng] [2024-12-15 00:30:30,862] [main] testng.configDirectory = /config
[testng] [2024-12-15 00:30:30,870] [main] testng.multiplier = 1.0
[testng] [2024-12-15 00:30:30,871] [main] testng.in-memory = false
[testng] [2024-12-15 00:30:30,871] [main] testng.allow-missing = false
[testng] [2024-12-15 00:30:30,871] [main] user.language = en
[testng] [2024-12-15 00:30:30,872] [main] user.country = ${user.country}
[testng] [2024-12-15 00:30:30,872] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-15 00:30:31,411] [main] ----------------------------------------
[testng] [2024-12-15 00:30:31,411] [main] Total files: 22
[testng] [2024-12-15 00:30:31,412] [main] Scan time: 0.539 s (24 ms/file)
[testng] [2024-12-15 00:30:31,412] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 22 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-15 00:34:47,186] [pool-1-thread-1] Initializing /data/imagej/fat-cells.zip:
[testng] 00:34:47,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:34:47,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:47,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-15_00-34-47.log]
[testng] 00:34:47,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cb2c34b - End of configuration.
[testng] [2024-12-15 00:34:58,511] [pool-1-thread-12] Initializing /data/imagej/gel-electrophoresis.zip:
[testng] 00:34:58,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:34:58,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:34:58,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-15_00-34-58.log]
[testng] 00:34:58,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35dffa3d - End of configuration.
[testng] [2024-12-15 00:35:07,080] [pool-1-thread-11] Initializing /data/imagej/3D_Chromosome.zip:
[testng] 00:35:07,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:35:07,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:07,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-15_00-35-07.log]
[testng] 00:35:07,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aa4b958 - End of configuration.
[testng] [2024-12-15 00:35:15,692] [pool-1-thread-10] Initializing /data/imagej/xrays.zip:
[testng] 00:35:15,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:35:15,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:15,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-15_00-35-15.log]
[testng] 00:35:15,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a002f1 - End of configuration.
[testng] [2024-12-15 00:35:21,565] [pool-1-thread-9] Initializing /data/imagej/flybrain.zip:
[testng] 00:35:21,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:35:21,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:21,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-15_00-35-21.log]
[testng] 00:35:21,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fcb720b - End of configuration.
[testng] [2024-12-15 00:35:43,164] [pool-1-thread-8] Initializing /data/imagej/m51.zip:
[testng] 00:35:43,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:35:43,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:43,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-15_00-35-43.log]
[testng] 00:35:43,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32f860d - End of configuration.
[testng] [2024-12-15 00:35:48,989] [pool-1-thread-7] Initializing /data/imagej/se3.zip:
[testng] 00:35:48,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:35:48,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:48,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-15_00-35-48.log]
[testng] 00:35:48,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b40e4ec - End of configuration.
[testng] [2024-12-15 00:36:06,950] [pool-1-thread-6] Initializing /data/imagej/cheetah_256_8.tif.zip:
[testng] 00:36:06,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:36:06,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:06,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-15_00-36-06.log]
[testng] 00:36:06,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@255e6859 - End of configuration.
[testng] [2024-12-15 00:36:20,365] [pool-1-thread-5] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip:
[testng] 00:36:20,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:36:20,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:20,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-15_00-36-20.log]
[testng] 00:36:20,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a87b0b0 - End of configuration.
[testng] [2024-12-15 00:36:29,690] [pool-1-thread-4] Initializing /data/imagej/RatBrain.zip:
[testng] 00:36:29,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:36:29,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:29,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_00-36-29.log]
[testng] 00:36:29,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47b92663 - End of configuration.
[testng] [2024-12-15 00:36:36,605] [pool-1-thread-3] Initializing /data/imagej/4D-Stack(256x256x20x10).zip:
[testng] 00:36:36,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:36:36,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:36,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-15_00-36-36.log]
[testng] 00:36:36,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10033bd5 - End of configuration.
[testng] [2024-12-15 00:36:54,514] [pool-1-thread-2] Initializing /data/imagej/hela-cells.zip:
[testng] 00:36:54,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:36:54,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:54,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-15_00-36-54.log]
[testng] 00:36:54,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@196ae177 - End of configuration.
[testng] [2024-12-15 00:38:17,792] [pool-1-thread-8] Initializing /data/samples/bat-cochlea-volume.zip:
[testng] [2024-12-15 00:38:31,787] [pool-1-thread-10] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip:
[testng] [2024-12-15 00:38:52,749] [pool-1-thread-11] Initializing /data/imagej/confocal-stack.zip:
[testng] [2024-12-15 00:39:23,933] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip:
[testng] [2024-12-15 00:39:31,514] [pool-1-thread-6] Initializing /data/samples/sdub.zip:
[testng] [2024-12-15 00:40:01,119] [pool-1-thread-6] Initializing /data/imagej/mri-stack.zip:
[testng] [2024-12-15 00:40:08,662] [pool-1-thread-2] Initializing /data/imagej/blood-brain-barrier.zip:
[testng] [2024-12-15 00:40:40,711] [pool-1-thread-12] Initializing /data/imagej/watershed-animation.zip:
[testng] [2024-12-15 00:40:48,145] [pool-1-thread-5] Initializing /data/imagej/FluorescentCells.zip:
[testng] [2024-12-15 00:41:24,608] [pool-1-thread-1] Initializing /data/imagej/confocal-series.zip:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1166, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 15 minutes 49 seconds
Finished: SUCCESS