Started by upstream project "BIOFORMATS-test-repo" build number 34
originally caused by:
Started by upstream project "Trigger" build number 38
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13556392158232236813.sh
+ '[' samples = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_4594_merge_ci -v /uod/idr/repos/curated/samples:/data -v /uod/idr-scratch/merge-ci/curated/samples:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:26:04,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:26:04,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:26:04,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:26:04,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:26:04,497 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:26:04,497 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:26:04,498 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:26:04,498 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:26:04,499 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:26:04,500 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:26:04,501 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 462 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-15 01:26:04,526] [main] java.version = 1.8.0_342
[testng] 01:26:04,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:26:04,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:04,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-15_01-26-04.log]
[testng] 01:26:04,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-15 01:26:04,626] [main] testng.directory = /data
[testng] [2024-04-15 01:26:04,627] [main] testng.configDirectory = /config
[testng] [2024-04-15 01:26:04,648] [main] testng.multiplier = 1.0
[testng] [2024-04-15 01:26:04,648] [main] testng.in-memory = false
[testng] [2024-04-15 01:26:04,648] [main] testng.allow-missing = false
[testng] [2024-04-15 01:26:04,649] [main] user.language = fr
[testng] [2024-04-15 01:26:04,649] [main] user.country = FR
[testng] [2024-04-15 01:26:04,649] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-15 01:26:28,138] [main] ----------------------------------------
[testng] [2024-04-15 01:26:28,138] [main] Total files: 164
[testng] [2024-04-15 01:26:28,138] [main] Scan time: 23.489 s (143 ms/file)
[testng] [2024-04-15 01:26:28,138] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 59 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-15 01:26:38,954] [pool-1-thread-2] Initializing /data/ome/nfat10x3 good2_D12_w3.TIF:
[testng] 01:26:38,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:26:38,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:38,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-15_01-26-38.log]
[testng] 01:26:38,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@645630df - End of configuration.
[testng] [2024-04-15 01:26:39,023] [pool-1-thread-11] Initializing /data/ome/t0_pos1-0_5x.lsm:
[testng] 01:26:39,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:26:39,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:39,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-15_01-26-39.log]
[testng] 01:26:39,025 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72912c4c - End of configuration.
[testng] [2024-04-15 01:26:39,079] [pool-1-thread-12] Initializing /data/openjpeg/FacadeERROPJW.bmp:
[testng] 01:26:39,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:26:39,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:39,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-15_01-26-39.log]
[testng] 01:26:39,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63df2aef - End of configuration.
[testng] [2024-04-15 01:26:39,090] [pool-1-thread-10] Initializing /data/ome/Adultmidsection.lsm:
[testng] 01:26:39,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:26:39,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:39,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-15_01-26-39.log]
[testng] 01:26:39,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ba50fe4 - End of configuration.
[testng] [2024-04-15 01:26:39,130] [pool-1-thread-9] Initializing /data/ome/654Atemp.stk:
[testng] 01:26:39,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:26:39,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:39,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-15_01-26-39.log]
[testng] 01:26:39,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20d604cc - End of configuration.
[testng] [2024-04-15 01:26:39,295] [pool-1-thread-8] Initializing /data/openjpeg/Cevennes1.bmp:
[testng] 01:26:39,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:26:39,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:39,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-15_01-26-39.log]
[testng] 01:26:39,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cf5c0b1 - End of configuration.
[testng] [2024-04-15 01:26:39,307] [pool-1-thread-7] Initializing /data/ome/embryo.lsm:
[testng] 01:26:39,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:26:39,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:39,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-15_01-26-39.log]
[testng] 01:26:39,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e0ad73a - End of configuration.
[testng] [2024-04-15 01:26:39,346] [pool-1-thread-6] Initializing /data/openjpeg/thumb_FacadeCOMP.jpg:
[testng] 01:26:39,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:26:39,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:39,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-15_01-26-39.log]
[testng] 01:26:39,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25e7363b - End of configuration.
[testng] [2024-04-15 01:26:39,360] [pool-1-thread-3] Initializing /data/ome/worm.tiff:
[testng] 01:26:39,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:26:39,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:39,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-15_01-26-39.log]
[testng] 01:26:39,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79e800fb - End of configuration.
[testng] [2024-04-15 01:26:39,455] [pool-1-thread-1] Initializing /data/ome/EXPERIMENT38_w1FITC_t1.STK:
[testng] 01:26:39,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:26:39,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:39,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-15_01-26-39.log]
[testng] 01:26:39,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ddce935 - End of configuration.
[testng] [2024-04-15 01:26:39,493] [pool-1-thread-5] Initializing /data/ome/Cmidmusgfp1.lsm:
[testng] 01:26:39,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:26:39,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:39,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-15_01-26-39.log]
[testng] 01:26:39,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@739e75e5 - End of configuration.
[testng] [2024-04-15 01:26:39,540] [pool-1-thread-4] Initializing /data/openjpeg/Cevennes1.ppm:
[testng] 01:26:39,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:26:39,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:26:39,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-15_01-26-39.log]
[testng] 01:26:39,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b89f - End of configuration.
[testng] [2024-04-15 01:26:41,769] [pool-1-thread-6] Initializing /data/ome/C1.lsm:
[testng] [2024-04-15 01:26:41,795] [pool-1-thread-1] Initializing /data/sdub/sdub.pattern:
[testng] [2024-04-15 01:26:42,001] [pool-1-thread-5] Initializing /data/openjpeg/thumb_Bretagne2.jpg:
[testng] [2024-04-15 01:26:42,011] [pool-1-thread-7] Initializing /data/ome/arwen0205_raw00201.pic:
[testng] [2024-04-15 01:26:42,053] [pool-1-thread-10] Initializing /data/openjpeg/Rome.ppm:
[testng] [2024-04-15 01:26:42,059] [pool-1-thread-2] Initializing /data/openjpeg/Facade.bmp:
[testng] [2024-04-15 01:26:42,538] [pool-1-thread-11] Initializing /data/ome/anusgfpzs.lsm:
[testng] [2024-04-15 01:26:42,585] [pool-1-thread-9] Initializing /data/ome/PA-SDS-RFP-CenB_w1GFP_t1.stk:
[testng] [2024-04-15 01:26:42,689] [pool-1-thread-4] Initializing /data/ome/C1midmusnorm.lsm:
[testng] [2024-04-15 01:26:42,880] [pool-1-thread-5] Initializing /data/openjpeg/Bretagne1.bmp:
[testng] [2024-04-15 01:26:43,017] [pool-1-thread-10] Initializing /data/openjpeg/Cevennes2.jp2:
[testng] [2024-04-15 01:26:43,810] [pool-1-thread-12] Initializing /data/openjpeg/Facade.pnm:
[testng] [2024-04-15 01:26:43,823] [pool-1-thread-6] Initializing /data/openjpeg/Rome.bmp:
[testng] [2024-04-15 01:26:43,955] [pool-1-thread-4] Initializing /data/ome/tiffany.color.tiff:
[testng] [2024-04-15 01:26:44,167] [pool-1-thread-5] Initializing /data/ome/cb_1.r3d:
[testng] [2024-04-15 01:26:44,385] [pool-1-thread-3] Initializing /data/openjpeg/Bretagne1.j2k:
[testng] [2024-04-15 01:26:44,419] [pool-1-thread-6] Initializing /data/openjpeg/Bretagne2.ppm:
[testng] [2024-04-15 01:26:44,669] [pool-1-thread-11] Initializing /data/ome/nfat10x3 good2_D12_w1.TIF:
[testng] [2024-04-15 01:26:44,950] [pool-1-thread-8] Initializing /data/ome/compressed2ChZ.lsm:
[testng] [2024-04-15 01:26:45,052] [pool-1-thread-9] Initializing /data/ome/tinyTest.d3d.dv:
[testng] [2024-04-15 01:26:45,204] [pool-1-thread-1] Initializing /data/openjpeg/Cevennes2.ppm:
[testng] [2024-04-15 01:26:45,270] [pool-1-thread-9] Initializing /data/openjpeg/thumb_facade.jpg:
[testng] [2024-04-15 01:26:45,460] [pool-1-thread-10] Initializing /data/openjpeg/Bretagne2.bmp:
[testng] [2024-04-15 01:26:45,828] [pool-1-thread-5] Initializing /data/mouse-kidney/mouse-kidney.lif:
[testng] [2024-04-15 01:26:45,887] [pool-1-thread-1] Initializing /data/ome/210502-0min-NFKB-4.r3d:
[testng] [2024-04-15 01:26:45,910] [pool-1-thread-4] Initializing /data/ome/011B1_Morph.HTD:
[testng] [2024-04-15 01:26:46,566] [pool-1-thread-9] Initializing /data/openjpeg/Cevennes1.j2k:
[testng] [2024-04-15 01:26:46,627] [pool-1-thread-7] Initializing /data/ome/CHOBI_d3d.dv:
[testng] [2024-04-15 01:26:46,726] [pool-1-thread-2] Initializing /data/openjpeg/Rome.jp2:
[testng] [2024-04-15 01:26:46,787] [pool-1-thread-11] Initializing /data/openjpeg/Cevennes2.bmp:
[testng] [2024-04-15 01:26:46,815] [pool-1-thread-12] Initializing /data/ome/C1lowmusgfp.lsm:
[testng] [2024-04-15 01:26:47,030] [pool-1-thread-8] Initializing /data/kidney_TFl/kidney_TFl.pattern:
[testng] [2024-04-15 01:26:47,115] [pool-1-thread-3] Initializing /data/openjpeg/thumb_Cevennes2.jpg:
[testng] [2024-04-15 01:26:47,165] [pool-1-thread-7] Initializing /data/openjpeg/thumb_Cevennes1.jpg:
[testng] [2024-04-15 01:26:47,288] [pool-1-thread-12] Initializing /data/ome/nfat10x3 good2_D12_w2.TIF:
[testng] [2024-04-15 01:26:47,375] [pool-1-thread-3] Initializing /data/openjpeg/Bretagne1.ppm:
[testng] [2024-04-15 01:26:47,382] [pool-1-thread-6] Initializing /data/ome/n2_plate18_P24_w1.tif:
[testng] [2024-04-15 01:26:47,494] [pool-1-thread-11] Initializing /data/TAABA/TAABA.pattern:
[testng] [2024-04-15 01:26:48,807] [pool-1-thread-5] Initializing /data/ome/t1_pos1-0_5x.lsm:
[testng] [2024-04-15 01:26:48,847] [pool-1-thread-7] Initializing /data/openjpeg/Bretagne2.j2k:
[testng] [2024-04-15 01:26:48,917] [pool-1-thread-1] Initializing /data/openjpeg/thumb_Rome.jpg:
[testng] [2024-04-15 01:26:49,048] [pool-1-thread-1] Initializing /data/ome/Cpharynxzs1.lsm:
[testng] [2024-04-15 01:26:49,114] [pool-1-thread-3] Initializing /data/openjpeg/FacadeERROPJ.bmp:
[testng] [2024-04-15 01:26:49,240] [pool-1-thread-8] Initializing /data/openjpeg/thumb_Bretagne1.jpg:
[testng] [2024-04-15 01:26:49,274] [pool-1-thread-6] Initializing /data/10-31 E1/10-31 E1.tif:
[testng] [2024-04-15 01:26:49,619] [pool-1-thread-12] Initializing /data/ome/PA-tub-wtmcakthurs-5_w1GFP_t1.STK:
[testng] [2024-04-15 01:26:49,844] [pool-1-thread-8] Initializing /data/openjpeg/thumb_Speedway.jpg:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 3127, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 35 seconds
Finished: SUCCESS