Started by upstream project "BIOFORMATS-test-repo" build number 291
originally caused by:
Started by upstream project "Trigger" build number 310
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9942851934087373605.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45940_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:36:32,166 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:36:32,167 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:36:32,167 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:36:32,168 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:36:32,169 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:36:32,169 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:36:32,169 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:36:32,169 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:36:32,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:36:32,170 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:36:32,170 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:36:32,171 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:36:32,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:36:32,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:36:32,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:36:32,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:36:32,616 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:36:32,616 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:36:32,616 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:36:32,617 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:36:32,617 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:36:32,618 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:36:32,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 448 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-15 00:36:32,626] [main] java.version = 17.0.2
[testng] 00:36:32,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:36:32,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:32,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_00-36-32.log]
[testng] 00:36:32,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-15 00:36:32,684] [main] testng.directory = /data
[testng] [2024-12-15 00:36:32,684] [main] testng.configDirectory = /config
[testng] [2024-12-15 00:36:32,724] [main] testng.multiplier = 1.0
[testng] [2024-12-15 00:36:32,725] [main] testng.in-memory = false
[testng] [2024-12-15 00:36:32,725] [main] testng.allow-missing = false
[testng] [2024-12-15 00:36:32,725] [main] user.language = en
[testng] [2024-12-15 00:36:32,725] [main] user.country = ${user.country}
[testng] [2024-12-15 00:36:32,725] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-15 00:46:07,765] [main] ----------------------------------------
[testng] [2024-12-15 00:46:07,765] [main] Total files: 226
[testng] [2024-12-15 00:46:07,765] [main] Scan time: 575.04 s (2544 ms/file)
[testng] [2024-12-15 00:46:07,765] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-15 00:54:42,235] [pool-1-thread-1] Initializing /data/fluoview/SpineAnimation.tif:
[testng] 00:54:42,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:54:42,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:42,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-15_00-54-42.log]
[testng] 00:54:42,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67db4e4b - End of configuration.
[testng] [2024-12-15 00:54:44,463] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 00:54:44,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:54:44,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:44,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-15_00-54-44.log]
[testng] 00:54:44,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76a4adcb - End of configuration.
[testng] [2024-12-15 00:54:46,306] [pool-1-thread-11] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] 00:54:46,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:54:46,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:46,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-15_00-54-46.log]
[testng] 00:54:46,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@195e4f02 - End of configuration.
[testng] [2024-12-15 00:54:47,074] [pool-1-thread-10] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] 00:54:47,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:54:47,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:47,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-15_00-54-47.log]
[testng] 00:54:47,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ecb8847 - End of configuration.
[testng] [2024-12-15 00:54:47,452] [pool-1-thread-9] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 00:54:47,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:54:47,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:47,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-15_00-54-47.log]
[testng] 00:54:47,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78cda41f - End of configuration.
[testng] [2024-12-15 00:54:47,824] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] 00:54:47,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:54:47,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:47,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-15_00-54-47.log]
[testng] 00:54:47,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fde1eb4 - End of configuration.
[testng] [2024-12-15 00:54:50,641] [pool-1-thread-7] Initializing /data/iplab/Color Histology.IPL:
[testng] 00:54:50,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:54:50,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:50,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-15_00-54-50.log]
[testng] 00:54:50,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bfa1ecc - End of configuration.
[testng] [2024-12-15 00:54:50,899] [pool-1-thread-6] Initializing /data/iplab/Blend_Final.IPL:
[testng] 00:54:50,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:54:50,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:50,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-15_00-54-50.log]
[testng] 00:54:50,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@671da89c - End of configuration.
[testng] [2024-12-15 00:54:51,111] [pool-1-thread-5] Initializing /data/fluoview/Sample_XT.tif:
[testng] 00:54:51,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:54:51,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:51,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-15_00-54-51.log]
[testng] 00:54:51,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ed9c18d - End of configuration.
[testng] [2024-12-15 00:54:52,712] [pool-1-thread-4] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 00:54:52,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:54:52,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:52,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_00-54-52.log]
[testng] 00:54:52,713 |-INFO in ch.qos.logback.core.sift.SiftProcessor@344708d2 - End of configuration.
[testng] [2024-12-15 00:54:52,901] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] 00:54:52,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:54:52,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:52,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-15_00-54-52.log]
[testng] 00:54:52,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32bc5080 - End of configuration.
[testng] [2024-12-15 00:54:54,502] [pool-1-thread-2] Initializing /data/iplab/16Bit XRay.IPL:
[testng] 00:54:54,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:54:54,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:54,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-15_00-54-54.log]
[testng] 00:54:54,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67a4a550 - End of configuration.
[testng] [2024-12-15 00:54:59,628] [pool-1-thread-2] Initializing /data/iplab/Actin.IPL:
[testng] [2024-12-15 00:55:00,117] [pool-1-thread-7] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] [2024-12-15 00:55:02,255] [pool-1-thread-6] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2024-12-15 00:55:02,654] [pool-1-thread-9] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2024-12-15 00:55:03,343] [pool-1-thread-4] Initializing /data/iplab/Color Image.IPL:
[testng] [2024-12-15 00:55:03,682] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2024-12-15 00:55:04,041] [pool-1-thread-11] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2024-12-15 00:55:09,141] [pool-1-thread-4] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2024-12-15 00:55:10,571] [pool-1-thread-2] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2024-12-15 00:55:10,831] [pool-1-thread-6] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2024-12-15 00:55:11,270] [pool-1-thread-10] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-12-15 00:55:12,852] [pool-1-thread-3] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-12-15 00:55:14,918] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] [2024-12-15 00:55:16,365] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] [2024-12-15 00:55:17,890] [pool-1-thread-1] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-12-15 00:55:19,012] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 19 minutes 7 seconds
Finished: SUCCESS