Started by upstream project "BIOFORMATS-test-repo" build number 291
originally caused by:
Started by upstream project "Trigger" build number 310
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins557578552835080441.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_45964_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:44:22,122 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:44:22,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 01:44:22,123 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:44:22,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:44:22,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:44:22,125 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:44:22,126 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:44:22,126 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:44:22,126 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:44:22,127 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:44:22,127 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:44:22,127 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:44:22,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:44:22,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:44:22,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:44:22,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:44:22,323 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:44:22,323 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:44:22,323 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:44:22,324 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:44:22,324 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 01:44:22,325 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 01:44:22,325 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-15 01:44:22,334] [main] java.version = 17.0.2
[testng] 01:44:22,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:44:22,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:22,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-15_01-44-22.log]
[testng] 01:44:22,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-15 01:44:22,381] [main] testng.directory = /data
[testng] [2024-12-15 01:44:22,382] [main] testng.configDirectory = /config
[testng] [2024-12-15 01:44:22,391] [main] testng.multiplier = 1.0
[testng] [2024-12-15 01:44:22,392] [main] testng.in-memory = false
[testng] [2024-12-15 01:44:22,392] [main] testng.allow-missing = false
[testng] [2024-12-15 01:44:22,392] [main] user.language = en
[testng] [2024-12-15 01:44:22,392] [main] user.country = ${user.country}
[testng] [2024-12-15 01:44:22,392] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-15 01:44:22,991] [main] ----------------------------------------
[testng] [2024-12-15 01:44:22,991] [main] Total files: 25
[testng] [2024-12-15 01:44:22,992] [main] Scan time: 0.599 s (23 ms/file)
[testng] [2024-12-15 01:44:22,992] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-15 01:44:51,829] [pool-1-thread-1] Initializing /data/brian/images/VENUS.pct:
[testng] 01:44:51,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:44:51,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:51,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-15_01-44-51.log]
[testng] 01:44:51,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56a092ab - End of configuration.
[testng] [2024-12-15 01:44:52,796] [pool-1-thread-12] Initializing /data/misc/swlogo.pict:
[testng] 01:44:52,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:44:52,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:52,806 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-15_01-44-52.log]
[testng] 01:44:52,807 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35a87787 - End of configuration.
[testng] [2024-12-15 01:44:53,678] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct:
[testng] 01:44:53,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:44:53,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:53,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-15_01-44-53.log]
[testng] 01:44:53,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73594e19 - End of configuration.
[testng] [2024-12-15 01:44:54,760] [pool-1-thread-10] Initializing /data/brian/images/YEL.PCT:
[testng] 01:44:54,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:44:54,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:54,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-15_01-44-54.log]
[testng] 01:44:54,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b002e0d - End of configuration.
[testng] [2024-12-15 01:44:55,821] [pool-1-thread-9] Initializing /data/jqd/mireSixteen.pict:
[testng] 01:44:55,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:44:55,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:55,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-15_01-44-55.log]
[testng] 01:44:55,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36843569 - End of configuration.
[testng] [2024-12-15 01:44:56,863] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_B24.PCT:
[testng] 01:44:56,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:44:56,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:56,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-15_01-44-56.log]
[testng] 01:44:56,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a9d771a - End of configuration.
[testng] [2024-12-15 01:44:57,836] [pool-1-thread-7] Initializing /data/misc/planet2.pict:
[testng] 01:44:57,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:44:57,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:57,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-15_01-44-57.log]
[testng] 01:44:57,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37081102 - End of configuration.
[testng] [2024-12-15 01:44:58,708] [pool-1-thread-6] Initializing /data/jqd/sixteenBit.pict:
[testng] 01:44:58,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:44:58,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:58,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-15_01-44-58.log]
[testng] 01:44:58,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37370e56 - End of configuration.
[testng] [2024-12-15 01:44:59,722] [pool-1-thread-5] Initializing /data/jqd/32bit.pict:
[testng] 01:44:59,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:44:59,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:59,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-15_01-44-59.log]
[testng] 01:44:59,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11bee2d3 - End of configuration.
[testng] [2024-12-15 01:45:00,665] [pool-1-thread-4] Initializing /data/misc/planet.png:
[testng] 01:45:00,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:45:00,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:45:00,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-15_01-45-00.log]
[testng] 01:45:00,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@573e7e7b - End of configuration.
[testng] [2024-12-15 01:45:00,772] [pool-1-thread-3] Initializing /data/jqd/mire32.pict:
[testng] 01:45:00,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:45:00,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:45:00,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-15_01-45-00.log]
[testng] 01:45:00,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d957e1e - End of configuration.
[testng] [2024-12-15 01:45:01,626] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT:
[testng] 01:45:01,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:45:01,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:45:01,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-15_01-45-01.log]
[testng] 01:45:01,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43d6a3b1 - End of configuration.
[testng] [2024-12-15 01:45:07,046] [pool-1-thread-4] Initializing /data/brian/images/BLK.PCT:
[testng] [2024-12-15 01:45:13,580] [pool-1-thread-9] Initializing /data/brian/images/FLAG_RGB.pct:
[testng] [2024-12-15 01:45:14,438] [pool-1-thread-2] Initializing /data/brian/images/FLAG_B32.pct:
[testng] [2024-12-15 01:45:15,381] [pool-1-thread-3] Initializing /data/brian/images/BLU.PCT:
[testng] [2024-12-15 01:45:16,568] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32.pct:
[testng] [2024-12-15 01:45:17,545] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct:
[testng] [2024-12-15 01:45:18,387] [pool-1-thread-5] Initializing /data/misc/planet.pict:
[testng] [2024-12-15 01:45:19,386] [pool-1-thread-1] Initializing /data/brian/images/TRU256.PCT:
[testng] [2024-12-15 01:45:20,442] [pool-1-thread-7] Initializing /data/brian/images/FLAG_B24.PCT:
[testng] [2024-12-15 01:45:21,466] [pool-1-thread-11] Initializing /data/brian/images/WHT.PCT:
[testng] [2024-12-15 01:45:22,297] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct:
[testng] [2024-12-15 01:45:23,396] [pool-1-thread-8] Initializing /data/wayne/PotatoMeristem.pict:
[testng] [2024-12-15 01:45:28,751] [pool-1-thread-4] Initializing /data/brian/images/GRN.PCT:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 17 seconds
Finished: SUCCESS