Started by upstream project "BIOFORMATS-test-repo" build number 293
originally caused by:
Started by upstream project "Trigger" build number 312
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins963475230190341579.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46242_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:23:00,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:23:00,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
[testng] 00:23:00,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:23:00,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:23:00,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:23:00,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:23:00,744 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:23:00,744 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:23:00,744 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:23:00,745 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:23:00,745 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:23:00,745 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:23:00,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:23:00,918 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:23:00,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:23:00,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:23:00,947 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:23:00,947 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:23:00,947 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:23:00,947 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:23:00,947 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
[testng] 00:23:00,948 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
[testng] 00:23:00,948 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 204 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-17 00:23:00,957] [main] java.version = 11.0.16
[testng] 00:23:00,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:23:00,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:01,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-17_00-23-00.log]
[testng] 00:23:01,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-12-17 00:23:01,006] [main] testng.directory = /data
[testng] [2024-12-17 00:23:01,006] [main] testng.configDirectory = /config
[testng] [2024-12-17 00:23:01,016] [main] testng.multiplier = 1.0
[testng] [2024-12-17 00:23:01,017] [main] testng.in-memory = false
[testng] [2024-12-17 00:23:01,017] [main] testng.allow-missing = false
[testng] [2024-12-17 00:23:01,018] [main] user.language = en
[testng] [2024-12-17 00:23:01,018] [main] user.country = ${user.country}
[testng] [2024-12-17 00:23:01,018] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-17 00:23:15,516] [main] ----------------------------------------
[testng] [2024-12-17 00:23:15,516] [main] Total files: 36
[testng] [2024-12-17 00:23:15,516] [main] Scan time: 14.498 s (402 ms/file)
[testng] [2024-12-17 00:23:15,516] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 35 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-17 00:23:33,790] [pool-1-thread-1] Initializing /data/generated/mri-stack22.pcx:
[testng] 00:23:33,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:23:33,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:33,793 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-17_00-23-33.log]
[testng] 00:23:33,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25a0292 - End of configuration.
[testng] [2024-12-17 00:23:33,859] [pool-1-thread-12] Initializing /data/generated/mri-stack16.pcx:
[testng] 00:23:33,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:23:33,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:33,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-17_00-23-33.log]
[testng] 00:23:33,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4954ddaa - End of configuration.
[testng] [2024-12-17 00:23:33,886] [pool-1-thread-11] Initializing /data/generated/mri-stack3.pcx:
[testng] 00:23:33,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:23:33,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:33,887 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-17_00-23-33.log]
[testng] 00:23:33,887 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3467d1f5 - End of configuration.
[testng] [2024-12-17 00:23:33,911] [pool-1-thread-10] Initializing /data/generated/mri-stack6.pcx:
[testng] 00:23:33,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:23:33,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:33,912 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-17_00-23-33.log]
[testng] 00:23:33,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c47a364 - End of configuration.
[testng] [2024-12-17 00:23:33,937] [pool-1-thread-9] Initializing /data/generated/mri-stack4.pcx:
[testng] 00:23:33,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:23:33,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:33,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-17_00-23-33.log]
[testng] 00:23:33,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@505501df - End of configuration.
[testng] [2024-12-17 00:23:33,959] [pool-1-thread-8] Initializing /data/generated/mri-stack13.pcx:
[testng] 00:23:33,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:23:33,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:33,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-17_00-23-33.log]
[testng] 00:23:33,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c50709d - End of configuration.
[testng] [2024-12-17 00:23:33,994] [pool-1-thread-7] Initializing /data/generated/mri-stack18.pcx:
[testng] 00:23:33,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:23:33,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:33,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-17_00-23-33.log]
[testng] 00:23:33,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b2a2f3a - End of configuration.
[testng] [2024-12-17 00:23:34,049] [pool-1-thread-6] Initializing /data/generated/mri-stack14.pcx:
[testng] 00:23:34,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:23:34,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:34,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-17_00-23-34.log]
[testng] 00:23:34,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2032d1e9 - End of configuration.
[testng] [2024-12-17 00:23:34,075] [pool-1-thread-5] Initializing /data/generated/mri-stack26.pcx:
[testng] 00:23:34,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:23:34,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:34,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-17_00-23-34.log]
[testng] 00:23:34,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56ebccfb - End of configuration.
[testng] [2024-12-17 00:23:34,130] [pool-1-thread-4] Initializing /data/josh/Screenshots/nd2 color.pcx:
[testng] 00:23:34,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:23:34,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:34,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-17_00-23-34.log]
[testng] 00:23:34,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@671ff381 - End of configuration.
[testng] [2024-12-17 00:23:34,165] [pool-1-thread-3] Initializing /data/generated/mri-stack0.pcx:
[testng] 00:23:34,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:23:34,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:34,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-17_00-23-34.log]
[testng] 00:23:34,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18d78af2 - End of configuration.
[testng] [2024-12-17 00:23:34,210] [pool-1-thread-2] Initializing /data/generated/mri-stack10.pcx:
[testng] 00:23:34,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:23:34,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:23:34,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-17_00-23-34.log]
[testng] 00:23:34,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35f8188a - End of configuration.
[testng] [2024-12-17 00:23:39,125] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx:
[testng] [2024-12-17 00:23:39,141] [pool-1-thread-11] Initializing /data/generated/mri-stack5.pcx:
[testng] [2024-12-17 00:23:39,157] [pool-1-thread-1] Initializing /data/josh/Screenshots/leica-lif.pcx:
[testng] [2024-12-17 00:23:39,184] [pool-1-thread-4] Initializing /data/josh/Screenshots/biorad color off.pcx:
[testng] [2024-12-17 00:23:39,240] [pool-1-thread-7] Initializing /data/generated/mri-stack2.pcx:
[testng] [2024-12-17 00:23:39,425] [pool-1-thread-8] Initializing /data/josh/Screenshots/fv1000color.pcx:
[testng] [2024-12-17 00:23:39,462] [pool-1-thread-10] Initializing /data/josh/Screenshots/deltavision.pcx:
[testng] [2024-12-17 00:23:39,500] [pool-1-thread-2] Initializing /data/generated/mri-stack12.pcx:
[testng] [2024-12-17 00:23:39,530] [pool-1-thread-9] Initializing /data/generated/mri-stack15.pcx:
[testng] [2024-12-17 00:23:39,561] [pool-1-thread-5] Initializing /data/generated/mri-stack7.pcx:
[testng] [2024-12-17 00:23:39,604] [pool-1-thread-3] Initializing /data/josh/Screenshots/epscolor.pcx:
[testng] [2024-12-17 00:23:39,650] [pool-1-thread-6] Initializing /data/generated/mri-stack19.pcx:
[testng] [2024-12-17 00:23:42,571] [pool-1-thread-5] Initializing /data/generated/mri-stack11.pcx:
[testng] [2024-12-17 00:23:42,686] [pool-1-thread-7] Initializing /data/generated/mri-stack24.pcx:
[testng] [2024-12-17 00:23:42,842] [pool-1-thread-2] Initializing /data/generated/mri-stack1.pcx:
[testng] [2024-12-17 00:23:42,945] [pool-1-thread-9] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx:
[testng] [2024-12-17 00:23:43,263] [pool-1-thread-6] Initializing /data/generated/mri-stack21.pcx:
[testng] [2024-12-17 00:23:43,373] [pool-1-thread-12] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx:
[testng] [2024-12-17 00:23:43,393] [pool-1-thread-11] Initializing /data/generated/mri-stack17.pcx:
[testng] [2024-12-17 00:23:43,534] [pool-1-thread-3] Initializing /data/generated/mri-stack8.pcx:
[testng] [2024-12-17 00:23:43,921] [pool-1-thread-1] Initializing /data/generated/mri-stack25.pcx:
[testng] [2024-12-17 00:23:44,040] [pool-1-thread-10] Initializing /data/generated/mri-stack9.pcx:
[testng] [2024-12-17 00:23:44,154] [pool-1-thread-4] Initializing /data/generated/mri-stack20.pcx:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1855, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 50 seconds
Finished: SUCCESS