Started by upstream project "BIOFORMATS-test-repo" build number 293
originally caused by:
 Started by upstream project "Trigger" build number 312
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins6008341526785703572.sh
+ '[' biorad-gel = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46376_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 09:03:24,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 09:03:24,322 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 09:03:24,322 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 09:03:24,323 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 09:03:24,323 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 09:03:24,324 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 09:03:24,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 09:03:24,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 09:03:24,325 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 09:03:24,325 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 09:03:24,326 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 09:03:24,326 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 09:03:24,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 09:03:24,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 09:03:24,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 09:03:24,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 09:03:24,517 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 09:03:24,517 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 09:03:24,517 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 09:03:24,517 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 09:03:24,517 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 09:03:24,518 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 09:03:24,518 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-17 09:03:24,527] [main] java.version = 11.0.16
   [testng] 09:03:24,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 09:03:24,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:03:24,571 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-17_09-03-24.log]
   [testng] 09:03:24,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-12-17 09:03:24,574] [main] testng.directory = /data
   [testng] [2024-12-17 09:03:24,574] [main] testng.configDirectory = /config
   [testng] [2024-12-17 09:03:24,583] [main] testng.multiplier = 1.0
   [testng] [2024-12-17 09:03:24,585] [main] testng.in-memory = false
   [testng] [2024-12-17 09:03:24,585] [main] testng.allow-missing = false
   [testng] [2024-12-17 09:03:24,585] [main] user.language = en
   [testng] [2024-12-17 09:03:24,585] [main] user.country = ${user.country}
   [testng] [2024-12-17 09:03:24,585] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-17 09:03:31,970] [main] ----------------------------------------
   [testng] [2024-12-17 09:03:31,970] [main] Total files: 32
   [testng] [2024-12-17 09:03:31,970] [main] Scan time: 7.385 s (230 ms/file)
   [testng] [2024-12-17 09:03:31,970] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 32 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-17 09:04:36,011] [pool-1-thread-1] Initializing /data/keith/PF020426MRSA v2.1sc: 
   [testng] 09:04:36,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 09:04:36,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:36,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-17_09-04-36.log]
   [testng] 09:04:36,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b13ec45 - End of configuration.
   [testng] [2024-12-17 09:04:37,173] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 57min: 
   [testng] 09:04:37,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 09:04:37,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:37,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-17_09-04-37.log]
   [testng] 09:04:37,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aaa4c36 - End of configuration.
   [testng] [2024-12-17 09:04:38,762] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 59min: 
   [testng] 09:04:38,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 09:04:38,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:38,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-17_09-04-38.log]
   [testng] 09:04:38,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b61e4ef - End of configuration.
   [testng] [2024-12-17 09:04:40,092] [pool-1-thread-10] Initializing /data/geert/bad example1.1sc.jpg: 
   [testng] 09:04:40,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 09:04:40,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:40,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-17_09-04-40.log]
   [testng] 09:04:40,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76f3ce37 - End of configuration.
   [testng] [2024-12-17 09:04:40,526] [pool-1-thread-9] Initializing /data/david/Opened in imageJ.tiff: 
   [testng] 09:04:40,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 09:04:40,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:40,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-17_09-04-40.log]
   [testng] 09:04:40,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ea0c07f - End of configuration.
   [testng] [2024-12-17 09:04:45,377] [pool-1-thread-8] Initializing /data/geert/good example1.1sc: 
   [testng] 09:04:45,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 09:04:45,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:45,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-17_09-04-45.log]
   [testng] 09:04:45,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@699bdce1 - End of configuration.
   [testng] [2024-12-17 09:04:46,595] [pool-1-thread-7] Initializing /data/sylvain/2009-10-23 12hr 18min: 
   [testng] 09:04:46,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 09:04:46,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:46,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-17_09-04-46.log]
   [testng] 09:04:46,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7bd930 - End of configuration.
   [testng] [2024-12-17 09:04:48,083] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: 
   [testng] 09:04:48,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 09:04:48,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:48,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-17_09-04-48.log]
   [testng] 09:04:48,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69fbe0d6 - End of configuration.
   [testng] [2024-12-17 09:04:53,550] [pool-1-thread-5] Initializing /data/qa-29469/bad2.1sc: 
   [testng] 09:04:53,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 09:04:53,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:53,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-17_09-04-53.log]
   [testng] 09:04:53,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d12d788 - End of configuration.
   [testng] [2024-12-17 09:04:55,044] [pool-1-thread-4] Initializing /data/qa-29459/bad.1sc: 
   [testng] 09:04:55,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 09:04:55,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:55,045 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-17_09-04-55.log]
   [testng] 09:04:55,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24e651fd - End of configuration.
   [testng] [2024-12-17 09:04:56,448] [pool-1-thread-3] Initializing /data/keith/test.1sc: 
   [testng] 09:04:56,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 09:04:56,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:56,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-17_09-04-56.log]
   [testng] 09:04:56,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65ca33dd - End of configuration.
   [testng] [2024-12-17 09:04:57,684] [pool-1-thread-2] Initializing /data/qa-29469/bad3.1sc: 
   [testng] 09:04:57,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 09:04:57,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:04:57,685 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-17_09-04-57.log]
   [testng] 09:04:57,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78a34a7b - End of configuration.
   [testng] [2024-12-17 09:05:11,631] [pool-1-thread-3] Initializing /data/samples/Criterion.1sc: 
   [testng] [2024-12-17 09:05:13,151] [pool-1-thread-1] Initializing /data/geert/bad example1.jpg: 
   [testng] [2024-12-17 09:05:13,636] [pool-1-thread-4] Initializing /data/samples/imagesEight.1sc: 
   [testng] [2024-12-17 09:05:14,775] [pool-1-thread-2] Initializing /data/keith/PF020328saur v3.1sc: 
   [testng] [2024-12-17 09:05:16,032] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 56min: 
   [testng] [2024-12-17 09:05:17,649] [pool-1-thread-8] Initializing /data/sylvain/2009-10-23 12hr 19min: 
   [testng] [2024-12-17 09:05:19,182] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: 
   [testng] [2024-12-17 09:05:23,879] [pool-1-thread-12] Initializing /data/keith/test2.1sc: 
   [testng] [2024-12-17 09:05:25,263] [pool-1-thread-11] Initializing /data/geert/bad example1.1sc: 
   [testng] [2024-12-17 09:05:26,507] [pool-1-thread-10] Initializing /data/keith/pg020410saur3.1sc: 
   [testng] [2024-12-17 09:05:38,426] [pool-1-thread-10] Initializing /data/geert/good example1.1sc.jpg: 
   [testng] [2024-12-17 09:05:39,369] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: 
   [testng] [2024-12-17 09:05:47,699] [pool-1-thread-4] Initializing /data/qa-29469/good.1sc: 
   [testng] [2024-12-17 09:05:48,850] [pool-1-thread-3] Initializing /data/adrian/test_img.1sc: 
   [testng] [2024-12-17 09:05:50,068] [pool-1-thread-12] Initializing /data/qa-29459/bad.jpg: 
   [testng] [2024-12-17 09:05:50,451] [pool-1-thread-11] Initializing /data/david/Original Biorad Gel format file.1sc: 
   [testng] [2024-12-17 09:05:51,637] [pool-1-thread-8] Initializing /data/qa-16880/c-src v7.1sc: 
   [testng] [2024-12-17 09:05:52,769] [pool-1-thread-5] Initializing /data/david/Converted in Quantity One (Biorad).tiff: 
   [testng] [2024-12-17 09:05:56,931] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: 
   [testng] [2024-12-17 09:06:01,962] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1696, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 3 minutes 9 seconds
Finished: SUCCESS