Started by upstream project "BIOFORMATS-test-repo" build number 294
originally caused by:
Started by upstream project "Trigger" build number 313
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins18434928587871843029.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46418_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:25:29,316 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:25:29,317 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:25:29,317 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:25:29,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:25:29,318 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:25:29,319 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:25:29,319 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:25:29,319 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:25:29,319 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:25:29,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:25:29,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:25:29,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:25:29,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:25:29,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:25:29,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:25:29,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:25:29,497 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:25:29,497 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:25:29,497 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:25:29,497 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:25:29,497 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:25:29,498 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:25:29,498 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 179 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-18 00:25:29,506] [main] java.version = 17.0.2
[testng] 00:25:29,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:25:29,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:25:29,546 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_00-25-29.log]
[testng] 00:25:29,547 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-18 00:25:29,549] [main] testng.directory = /data
[testng] [2024-12-18 00:25:29,549] [main] testng.configDirectory = /config
[testng] [2024-12-18 00:25:29,557] [main] testng.multiplier = 1.0
[testng] [2024-12-18 00:25:29,558] [main] testng.in-memory = false
[testng] [2024-12-18 00:25:29,558] [main] testng.allow-missing = false
[testng] [2024-12-18 00:25:29,558] [main] user.language = en
[testng] [2024-12-18 00:25:29,558] [main] user.country = ${user.country}
[testng] [2024-12-18 00:25:29,558] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-18 00:26:36,963] [main] ----------------------------------------
[testng] [2024-12-18 00:26:36,964] [main] Total files: 320
[testng] [2024-12-18 00:26:36,964] [main] Scan time: 67.405 s (210 ms/file)
[testng] [2024-12-18 00:26:36,964] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 196 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-18 00:58:10,070] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] 00:58:10,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:58:10,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:10,071 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_00-58-10.log]
[testng] 00:58:10,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dcfc560 - End of configuration.
[testng] [2024-12-18 00:58:15,734] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] 00:58:15,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:58:15,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:15,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_00-58-15.log]
[testng] 00:58:15,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b97b8e4 - End of configuration.
[testng] [2024-12-18 00:58:17,532] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] 00:58:17,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:58:17,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:17,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_00-58-17.log]
[testng] 00:58:17,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e73aa2b - End of configuration.
[testng] [2024-12-18 00:58:19,730] [pool-1-thread-10] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] 00:58:19,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:58:19,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:19,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_00-58-19.log]
[testng] 00:58:19,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ce0549c - End of configuration.
[testng] [2024-12-18 00:58:20,722] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] 00:58:20,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:58:20,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:20,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_00-58-20.log]
[testng] 00:58:20,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ee436ef - End of configuration.
[testng] [2024-12-18 00:58:21,838] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] 00:58:21,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:58:21,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:21,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_00-58-21.log]
[testng] 00:58:21,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13077c70 - End of configuration.
[testng] [2024-12-18 00:58:23,581] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] 00:58:23,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:58:23,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:23,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_00-58-23.log]
[testng] 00:58:23,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c2a2757 - End of configuration.
[testng] [2024-12-18 00:58:24,151] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] 00:58:24,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:58:24,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:24,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-18_00-58-24.log]
[testng] 00:58:24,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@603138e5 - End of configuration.
[testng] [2024-12-18 00:58:25,715] [pool-1-thread-5] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] 00:58:25,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:58:25,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:58:25,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-18_00-58-25.log]
[testng] 00:58:25,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@743b6f3e - End of configuration.
[testng] [2024-12-18 00:59:20,628] [pool-1-thread-4] Initializing /data/cudmore/20190401__0005.oir:
[testng] 00:59:20,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:59:20,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:59:20,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_00-59-20.log]
[testng] 00:59:20,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f4a0d43 - End of configuration.
[testng] [2024-12-18 00:59:26,720] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] 00:59:26,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:59:26,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:59:26,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_00-59-26.log]
[testng] 00:59:26,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1afe0390 - End of configuration.
[testng] [2024-12-18 00:59:27,811] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] 00:59:27,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:59:27,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:59:27,812 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_00-59-27.log]
[testng] 00:59:27,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3207984c - End of configuration.
[testng] [2024-12-18 00:59:43,333] [pool-1-thread-6] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-12-18 00:59:44,831] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-12-18 00:59:48,013] [pool-1-thread-8] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-12-18 00:59:50,784] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-18 00:59:52,450] [pool-1-thread-1] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-12-18 01:00:15,611] [pool-1-thread-2] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-12-18 01:00:16,373] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-12-18 01:00:17,261] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-12-18 01:00:18,022] [pool-1-thread-9] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-12-18 01:00:30,216] [pool-1-thread-6] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-12-18 01:00:33,484] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-12-18 01:00:34,611] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-12-18 01:00:36,490] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-12-18 01:00:37,597] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-12-18 01:00:39,268] [pool-1-thread-8] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-12-18 01:00:45,272] [pool-1-thread-4] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-12-18 01:00:50,909] [pool-1-thread-7] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-12-18 01:00:52,392] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-12-18 01:00:57,552] [pool-1-thread-10] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-12-18 01:00:59,505] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-12-18 01:01:02,008] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-12-18 01:01:07,203] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-12-18 01:01:09,401] [pool-1-thread-3] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-12-18 01:01:15,776] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-12-18 01:01:18,598] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-12-18 01:01:22,330] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-12-18 01:01:30,373] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-12-18 01:01:35,389] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-12-18 01:01:37,909] [pool-1-thread-9] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-12-18 01:01:45,231] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-12-18 01:01:52,651] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-12-18 01:01:54,557] [pool-1-thread-10] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-12-18 01:01:55,910] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-12-18 01:02:06,330] [pool-1-thread-2] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-12-18 01:02:09,207] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-12-18 01:02:14,831] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-12-18 01:02:23,954] [pool-1-thread-7] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-12-18 01:02:25,970] [pool-1-thread-6] Initializing /data/olympus/XYZt.oir:
[testng] [2024-12-18 01:02:28,181] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-12-18 01:02:29,069] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-12-18 01:02:30,435] [pool-1-thread-9] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-12-18 01:02:32,943] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-12-18 01:02:42,691] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-12-18 01:02:44,417] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-12-18 01:02:46,231] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-12-18 01:02:52,392] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-12-18 01:02:53,849] [pool-1-thread-7] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-12-18 01:03:02,973] [pool-1-thread-12] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-12-18 01:03:09,036] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-12-18 01:03:12,443] [pool-1-thread-9] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-12-18 01:03:13,378] [pool-1-thread-4] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-12-18 01:03:15,686] [pool-1-thread-6] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-12-18 01:03:28,027] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-12-18 01:03:29,619] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-12-18 01:03:32,048] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-12-18 01:03:36,736] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-12-18 01:03:38,018] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-12-18 01:03:45,027] [pool-1-thread-7] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-12-18 01:03:46,091] [pool-1-thread-10] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-12-18 01:03:47,447] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-12-18 01:03:54,574] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-12-18 01:03:58,503] [pool-1-thread-4] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-12-18 01:03:59,403] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-12-18 01:04:02,146] [pool-1-thread-7] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-12-18 01:04:07,639] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-12-18 01:04:08,357] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-12-18 01:04:11,374] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-12-18 01:04:12,192] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-12-18 01:04:14,054] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-12-18 01:04:14,993] [pool-1-thread-4] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-12-18 01:04:20,107] [pool-1-thread-6] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-12-18 01:04:23,771] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-12-18 01:04:27,318] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-12-18 01:04:30,158] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-12-18 01:04:32,020] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-12-18 01:04:41,747] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-12-18 01:04:45,232] [pool-1-thread-7] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-12-18 01:04:47,416] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-12-18 01:04:50,740] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-12-18 01:04:53,056] [pool-1-thread-10] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-12-18 01:04:55,152] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-12-18 01:04:59,775] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-12-18 01:05:03,675] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-12-18 01:05:07,520] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-12-18 01:05:09,986] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-12-18 01:05:12,027] [pool-1-thread-12] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame.oir:
[testng] [2024-12-18 01:05:14,697] [pool-1-thread-10] Initializing /data/qa-17335/1.oir:
[testng] [2024-12-18 01:05:18,086] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-12-18 01:05:19,029] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-12-18 01:05:20,245] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-12-18 01:05:21,068] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-12-18 01:05:22,248] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-12-18 01:05:26,631] [pool-1-thread-6] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-12-18 01:05:27,767] [pool-1-thread-10] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-12-18 01:05:31,822] [pool-1-thread-7] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-12-18 01:05:35,153] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-12-18 01:05:38,409] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-12-18 01:05:49,146] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-12-18 01:05:51,694] [pool-1-thread-10] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-12-18 01:06:21,124] [pool-1-thread-3] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-12-18 01:06:27,564] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-12-18 01:06:34,454] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-12-18 01:06:37,835] [pool-1-thread-1] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-12-18 01:06:42,062] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-12-18 01:06:49,257] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-12-18 01:06:58,628] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-12-18 01:07:07,093] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-12-18 01:07:14,675] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-12-18 01:07:22,517] [pool-1-thread-9] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-12-18 01:07:28,411] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-12-18 01:07:30,606] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-12-18 01:07:35,842] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-12-18 01:07:40,080] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-18 01:07:53,408] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-12-18 01:07:56,306] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-12-18 01:07:59,166] [pool-1-thread-6] Initializing /data/public/imagesc-105684/1202-interval_10sec_sequence_frame.oir:
[testng] [2024-12-18 01:07:59,825] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-12-18 01:08:09,930] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-12-18 01:08:24,558] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-12-18 01:08:26,346] [pool-1-thread-7] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-12-18 01:08:32,959] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-12-18 01:08:34,937] [pool-1-thread-1] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame_z stack.oir:
[testng] [2024-12-18 01:08:44,564] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-12-18 01:08:48,914] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-12-18 01:08:53,931] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-12-18 01:09:06,597] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-12-18 01:09:17,192] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-12-18 01:09:26,796] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-12-18 01:09:39,612] [pool-1-thread-3] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-12-18 01:09:41,331] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-12-18 01:09:52,587] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-12-18 01:10:02,141] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-12-18 01:10:10,108] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-12-18 01:10:15,248] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-12-18 01:10:17,303] [pool-1-thread-7] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-12-18 01:10:19,652] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-12-18 01:10:30,700] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-12-18 01:10:34,654] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-12-18 01:10:37,796] [pool-1-thread-6] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-12-18 01:10:45,297] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-12-18 01:10:46,277] [pool-1-thread-8] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-12-18 01:10:48,127] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-12-18 01:10:49,208] [pool-1-thread-9] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-12-18 01:10:51,192] [pool-1-thread-6] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-12-18 01:10:52,490] [pool-1-thread-7] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-12-18 01:10:53,828] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-12-18 01:10:55,587] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-12-18 01:10:56,763] [pool-1-thread-4] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-12-18 01:10:58,973] [pool-1-thread-3] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-12-18 01:11:01,281] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-12-18 01:11:02,479] [pool-1-thread-9] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-12-18 01:11:03,521] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-12-18 01:11:05,821] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-12-18 01:11:10,438] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-12-18 01:11:13,304] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-12-18 01:11:14,000] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-12-18 01:11:14,772] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-12-18 01:11:16,968] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-12-18 01:11:18,043] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-12-18 01:11:19,422] [pool-1-thread-3] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-12-18 01:11:22,169] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-12-18 01:11:26,739] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-18 01:11:31,964] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-12-18 01:11:35,841] [pool-1-thread-3] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-12-18 01:11:37,751] [pool-1-thread-1] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-12-18 01:11:38,861] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-12-18 01:11:43,639] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-12-18 01:11:47,117] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-12-18 01:11:51,691] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-12-18 01:11:53,009] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-12-18 01:11:54,174] [pool-1-thread-9] Initializing /data/qa-17270/image1.oir:
[testng] [2024-12-18 01:11:59,041] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-12-18 01:12:04,050] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-12-18 01:12:07,574] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-12-18 01:12:09,786] [pool-1-thread-3] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-12-18 01:12:16,877] [pool-1-thread-1] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-12-18 01:12:19,726] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-12-18 01:12:21,841] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-12-18 01:12:27,525] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-12-18 01:12:32,201] [pool-1-thread-11] Initializing /data/public/imagesc-105684/1202-interval_freeRun_sequence_frame.oir:
[testng] [2024-12-18 01:12:34,041] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-12-18 01:12:44,115] [pool-1-thread-1] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-12-18 01:13:07,290] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-12-18 01:13:08,293] [pool-1-thread-7] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] 02:11:05,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:11:05,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:11:05,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_02-11-05.log]
[testng] 02:11:05,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47a30c7a - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10388, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 105 minutes 41 seconds
Finished: SUCCESS