Started by upstream project "BIOFORMATS-test-repo" build number 294
originally caused by:
Started by upstream project "Trigger" build number 313
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13909690967843049429.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46422_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:28:17,017 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:28:17,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:28:17,018 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:28:17,019 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:28:17,020 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:28:17,020 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:28:17,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:28:17,020 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:28:17,021 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:28:17,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:28:17,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:28:17,022 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:28:17,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:28:17,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:28:17,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:28:17,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:28:17,218 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:28:17,218 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:28:17,218 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:28:17,219 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:28:17,219 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:28:17,220 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:28:17,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-18 00:28:17,229] [main] java.version = 17.0.2
[testng] 00:28:17,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:28:17,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:17,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_00-28-17.log]
[testng] 00:28:17,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-18 00:28:17,276] [main] testng.directory = /data
[testng] [2024-12-18 00:28:17,276] [main] testng.configDirectory = /config
[testng] [2024-12-18 00:28:17,285] [main] testng.multiplier = 1.0
[testng] [2024-12-18 00:28:17,285] [main] testng.in-memory = false
[testng] [2024-12-18 00:28:17,286] [main] testng.allow-missing = false
[testng] [2024-12-18 00:28:17,286] [main] user.language = en
[testng] [2024-12-18 00:28:17,286] [main] user.country = ${user.country}
[testng] [2024-12-18 00:28:17,286] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-18 00:28:21,393] [main] ----------------------------------------
[testng] [2024-12-18 00:28:21,393] [main] Total files: 21
[testng] [2024-12-18 00:28:21,393] [main] Scan time: 4.107 s (195 ms/file)
[testng] [2024-12-18 00:28:21,393] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-18 00:28:41,166] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim:
[testng] 00:28:41,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:28:41,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:41,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_00-28-41.log]
[testng] 00:28:41,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f7923b8 - End of configuration.
[testng] [2024-12-18 00:28:41,329] [pool-1-thread-12] Initializing /data/venu/Kontrolle0002.lim:
[testng] 00:28:41,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:28:41,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:41,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_00-28-41.log]
[testng] 00:28:41,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1931bb8d - End of configuration.
[testng] [2024-12-18 00:28:41,517] [pool-1-thread-11] Initializing /data/venu/Kontrolle0021.lim:
[testng] 00:28:41,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:28:41,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:41,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_00-28-41.log]
[testng] 00:28:41,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b790ac5 - End of configuration.
[testng] [2024-12-18 00:28:41,621] [pool-1-thread-10] Initializing /data/venu/Kontrolle0020.lim:
[testng] 00:28:41,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:28:41,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:41,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_00-28-41.log]
[testng] 00:28:41,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@220a3cb6 - End of configuration.
[testng] [2024-12-18 00:28:42,013] [pool-1-thread-9] Initializing /data/venu/Kontrolle0009.lim:
[testng] 00:28:42,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:28:42,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:42,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_00-28-42.log]
[testng] 00:28:42,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7655bcc9 - End of configuration.
[testng] [2024-12-18 00:28:42,276] [pool-1-thread-8] Initializing /data/venu/Kontrolle0004.lim:
[testng] 00:28:42,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:28:42,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:42,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_00-28-42.log]
[testng] 00:28:42,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1814d4a5 - End of configuration.
[testng] [2024-12-18 00:28:42,943] [pool-1-thread-7] Initializing /data/venu/Kontrolle0018.lim:
[testng] 00:28:42,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:28:42,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:42,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_00-28-42.log]
[testng] 00:28:42,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@312b0422 - End of configuration.
[testng] [2024-12-18 00:28:43,499] [pool-1-thread-6] Initializing /data/venu/Kontrolle0007.lim:
[testng] 00:28:43,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:28:43,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:43,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-18_00-28-43.log]
[testng] 00:28:43,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289eed7 - End of configuration.
[testng] [2024-12-18 00:28:43,988] [pool-1-thread-5] Initializing /data/venu/Kontrolle0013.lim:
[testng] 00:28:43,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:28:43,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:43,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-18_00-28-43.log]
[testng] 00:28:43,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a38dfd9 - End of configuration.
[testng] [2024-12-18 00:28:44,278] [pool-1-thread-4] Initializing /data/venu/Kontrolle0014.lim:
[testng] 00:28:44,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:28:44,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:44,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_00-28-44.log]
[testng] 00:28:44,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c316fe - End of configuration.
[testng] [2024-12-18 00:28:44,580] [pool-1-thread-3] Initializing /data/venu/Kontrolle0005.lim:
[testng] 00:28:44,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:28:44,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:44,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_00-28-44.log]
[testng] 00:28:44,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69683f83 - End of configuration.
[testng] [2024-12-18 00:28:44,759] [pool-1-thread-2] Initializing /data/venu/Kontrolle0011.lim:
[testng] 00:28:44,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:28:44,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:28:44,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_00-28-44.log]
[testng] 00:28:44,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@616c7f82 - End of configuration.
[testng] [2024-12-18 00:28:57,633] [pool-1-thread-2] Initializing /data/venu/Kontrolle0019.lim:
[testng] [2024-12-18 00:28:59,109] [pool-1-thread-6] Initializing /data/venu/Kontrolle0012.lim:
[testng] [2024-12-18 00:28:59,981] [pool-1-thread-1] Initializing /data/venu/Kontrolle0017.lim:
[testng] [2024-12-18 00:29:00,346] [pool-1-thread-7] Initializing /data/venu/Kontrolle0010.lim:
[testng] [2024-12-18 00:29:01,161] [pool-1-thread-11] Initializing /data/venu/Kontrolle0008.lim:
[testng] [2024-12-18 00:29:02,168] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim:
[testng] [2024-12-18 00:29:02,617] [pool-1-thread-10] Initializing /data/venu/Kontrolle0015.lim:
[testng] [2024-12-18 00:29:03,508] [pool-1-thread-5] Initializing /data/venu/Kontrolle0001.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 55 seconds
Finished: SUCCESS