Started by upstream project "BIOFORMATS-test-repo" build number 294
originally caused by:
Started by upstream project "Trigger" build number 313
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins1294447007252646081.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46493_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 07:09:18,804 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 07:09:18,805 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 07:09:18,805 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:09:18,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:09:18,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 07:09:18,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 07:09:18,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 07:09:18,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:09:18,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:09:18,808 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 07:09:18,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 07:09:18,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 07:09:18,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 07:09:18,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 07:09:18,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 07:09:18,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 07:09:18,988 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 07:09:18,988 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 07:09:18,988 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 07:09:18,989 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 07:09:18,989 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 07:09:18,990 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 07:09:18,990 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-18 07:09:18,998] [main] java.version = 17.0.2
[testng] 07:09:19,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:09:19,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:09:19,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_07-09-19.log]
[testng] 07:09:19,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-18 07:09:19,043] [main] testng.directory = /data
[testng] [2024-12-18 07:09:19,043] [main] testng.configDirectory = /config
[testng] [2024-12-18 07:09:19,051] [main] testng.multiplier = 1.0
[testng] [2024-12-18 07:09:19,052] [main] testng.in-memory = false
[testng] [2024-12-18 07:09:19,052] [main] testng.allow-missing = false
[testng] [2024-12-18 07:09:19,052] [main] user.language = en
[testng] [2024-12-18 07:09:19,052] [main] user.country = ${user.country}
[testng] [2024-12-18 07:09:19,052] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-18 07:10:11,404] [main] ----------------------------------------
[testng] [2024-12-18 07:10:11,404] [main] Total files: 40
[testng] [2024-12-18 07:10:11,404] [main] Scan time: 52.352 s (1308 ms/file)
[testng] [2024-12-18 07:10:11,404] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 38 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-18 07:13:52,142] [pool-1-thread-1] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi:
[testng] 07:13:52,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 07:13:52,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:13:52,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_07-13-52.log]
[testng] 07:13:52,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68936a25 - End of configuration.
[testng] [2024-12-18 07:13:53,800] [pool-1-thread-12] Initializing /data/sample-avis/extra-chunk/HyperStack.avi:
[testng] 07:13:53,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 07:13:53,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:13:53,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_07-13-53.log]
[testng] 07:13:53,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7db3f7ed - End of configuration.
[testng] [2024-12-18 07:13:56,954] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-old.avi:
[testng] 07:13:56,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 07:13:56,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:13:56,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_07-13-56.log]
[testng] 07:13:56,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@655cdfb9 - End of configuration.
[testng] [2024-12-18 07:14:00,738] [pool-1-thread-10] Initializing /data/curtis/mri-stack-ij-new.avi:
[testng] 07:14:00,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 07:14:00,739 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:00,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_07-14-00.log]
[testng] 07:14:00,740 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44b35ac9 - End of configuration.
[testng] [2024-12-18 07:14:02,222] [pool-1-thread-9] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi:
[testng] 07:14:02,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 07:14:02,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:02,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_07-14-02.log]
[testng] 07:14:02,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76604f16 - End of configuration.
[testng] [2024-12-18 07:14:04,937] [pool-1-thread-8] Initializing /data/simon/24_bit_problem.avi:
[testng] 07:14:04,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 07:14:04,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:04,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_07-14-04.log]
[testng] 07:14:04,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@645c5dea - End of configuration.
[testng] [2024-12-18 07:14:06,919] [pool-1-thread-7] Initializing /data/kurt/40x_6um.avi:
[testng] 07:14:06,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 07:14:06,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:06,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_07-14-06.log]
[testng] 07:14:06,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3235878b - End of configuration.
[testng] [2024-12-18 07:14:11,695] [pool-1-thread-6] Initializing /data/chip_avi/Level001-ES-083.avi:
[testng] 07:14:11,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 07:14:11,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:11,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-18_07-14-11.log]
[testng] 07:14:11,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bf5cc19 - End of configuration.
[testng] [2024-12-18 07:14:16,834] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_10_20.avi:
[testng] 07:14:16,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 07:14:16,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:16,835 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-18_07-14-16.log]
[testng] 07:14:16,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@650b3843 - End of configuration.
[testng] [2024-12-18 07:14:20,732] [pool-1-thread-4] Initializing /data/kurt/40x_6um_2.avi:
[testng] 07:14:20,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 07:14:20,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:20,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_07-14-20.log]
[testng] 07:14:20,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49269c7b - End of configuration.
[testng] [2024-12-18 07:14:27,685] [pool-1-thread-3] Initializing /data/curtis/mri-stack-bf.avi:
[testng] 07:14:27,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 07:14:27,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:27,686 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_07-14-27.log]
[testng] 07:14:27,686 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51bb249f - End of configuration.
[testng] [2024-12-18 07:14:31,313] [pool-1-thread-2] Initializing /data/roger/spheroid1-crop.lsm movie.avi:
[testng] 07:14:31,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 07:14:31,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:14:31,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_07-14-31.log]
[testng] 07:14:31,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cfbbd8e - End of configuration.
[testng] [2024-12-18 07:15:05,044] [pool-1-thread-10] Initializing /data/roger/spheroid1.lsm movie.avi:
[testng] [2024-12-18 07:15:07,740] [pool-1-thread-5] Initializing /data/william/worm.avi:
[testng] [2024-12-18 07:15:10,226] [pool-1-thread-1] Initializing /data/qa-7450/MVI_3610.AVI:
[testng] [2024-12-18 07:15:12,756] [pool-1-thread-12] Initializing /data/qa-5019/nemo-2_1_.avi:
[testng] [2024-12-18 07:15:16,751] [pool-1-thread-3] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi:
[testng] [2024-12-18 07:15:20,402] [pool-1-thread-11] Initializing /data/ascb/TIRF.avi:
[testng] [2024-12-18 07:15:21,129] [pool-1-thread-6] Initializing /data/chip_avi/Level004-WA-116.avi:
[testng] [2024-12-18 07:15:23,544] [pool-1-thread-4] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi:
[testng] [2024-12-18 07:15:25,585] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie.avi:
[testng] [2024-12-18 07:15:26,070] [pool-1-thread-7] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi:
[testng] [2024-12-18 07:15:28,415] [pool-1-thread-2] Initializing /data/chris/APZ04_009.avi:
[testng] [2024-12-18 07:15:31,705] [pool-1-thread-9] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi:
[testng] [2024-12-18 07:15:51,590] [pool-1-thread-5] Initializing /data/chip_avi/Level003-DB-089.avi:
[testng] [2024-12-18 07:15:53,914] [pool-1-thread-9] Initializing /data/roger/op9middle40x.lsm movie 2.avi:
[testng] [2024-12-18 07:15:56,190] [pool-1-thread-3] Initializing /data/qa-11011/M-flow10001.avi:
[testng] [2024-12-18 07:15:57,652] [pool-1-thread-6] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi:
[testng] [2024-12-18 07:15:59,947] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 3.avi:
[testng] [2024-12-18 07:16:02,636] [pool-1-thread-11] Initializing /data/prairie/cornea dc and macs.AVI:
[testng] [2024-12-18 07:16:05,621] [pool-1-thread-4] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi:
[testng] [2024-12-18 07:16:08,060] [pool-1-thread-7] Initializing /data/jae/20xD_5minfor14h.avi:
[testng] [2024-12-18 07:16:10,684] [pool-1-thread-10] Initializing /data/chip_avi/Level002-DB-090.avi:
[testng] [2024-12-18 07:16:11,924] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 4.avi:
[testng] [2024-12-18 07:16:14,635] [pool-1-thread-12] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi:
[testng] [2024-12-18 07:16:18,606] [pool-1-thread-2] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi:
[testng] [2024-12-18 07:16:41,065] [pool-1-thread-10] Initializing /data/kurt/63x_6um.avi:
[testng] [2024-12-18 07:16:44,795] [pool-1-thread-5] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 2014, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 minutes 1 second
Finished: SUCCESS