Started by upstream project "BIOFORMATS-test-repo" build number 294
originally caused by:
Started by upstream project "Trigger" build number 313
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins13443412225259578819.sh
+ '[' zeiss-tiff = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46536_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 12:06:08,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 12:06:08,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 12:06:08,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 12:06:08,742 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 12:06:08,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 12:06:08,743 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 12:06:08,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 12:06:08,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 12:06:08,744 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 12:06:08,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 12:06:08,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 12:06:08,745 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 12:06:08,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 12:06:08,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 12:06:08,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 12:06:08,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 12:06:08,927 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 12:06:08,928 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 12:06:08,928 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 12:06:08,928 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 12:06:08,928 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 12:06:08,929 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 12:06:08,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-18 12:06:08,938] [main] java.version = 17.0.2
[testng] 12:06:08,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 12:06:08,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:06:08,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_12-06-08.log]
[testng] 12:06:08,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-18 12:06:08,983] [main] testng.directory = /data
[testng] [2024-12-18 12:06:08,983] [main] testng.configDirectory = /config
[testng] [2024-12-18 12:06:08,991] [main] testng.multiplier = 1.0
[testng] [2024-12-18 12:06:08,992] [main] testng.in-memory = false
[testng] [2024-12-18 12:06:08,992] [main] testng.allow-missing = false
[testng] [2024-12-18 12:06:08,992] [main] user.language = en
[testng] [2024-12-18 12:06:08,992] [main] user.country = ${user.country}
[testng] [2024-12-18 12:06:08,992] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-18 12:11:30,977] [main] ----------------------------------------
[testng] [2024-12-18 12:11:30,977] [main] Total files: 15735
[testng] [2024-12-18 12:11:30,977] [main] Scan time: 321.984 s (20 ms/file)
[testng] [2024-12-18 12:11:30,977] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 125 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-18 12:20:43,869] [pool-1-thread-1] Initializing /data/converted/stephan/notok1.tif:
[testng] 12:20:43,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 12:20:43,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:20:43,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_12-20-43.log]
[testng] 12:20:43,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cd9cc50 - End of configuration.
[testng] [2024-12-18 12:20:46,712] [pool-1-thread-12] Initializing /data/samples/mri-stack/mri-stack.tif:
[testng] 12:20:46,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 12:20:46,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:20:46,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_12-20-46.log]
[testng] 12:20:46,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@601b169e - End of configuration.
[testng] [2024-12-18 12:20:49,078] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif:
[testng] 12:20:49,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 12:20:49,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:20:49,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-18_12-20-49.log]
[testng] 12:20:49,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d92886a - End of configuration.
[testng] [2024-12-18 12:20:51,779] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif:
[testng] 12:20:51,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 12:20:51,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:20:51,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_12-20-51.log]
[testng] 12:20:51,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e7ceffa - End of configuration.
[testng] [2024-12-18 12:20:54,432] [pool-1-thread-9] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif:
[testng] 12:20:54,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 12:20:54,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:20:54,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-18_12-20-54.log]
[testng] 12:20:54,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@260dbf98 - End of configuration.
[testng] [2024-12-18 12:20:59,027] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif:
[testng] 12:20:59,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 12:20:59,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:20:59,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_12-20-59.log]
[testng] 12:20:59,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@186b3be3 - End of configuration.
[testng] [2024-12-18 12:21:01,385] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif:
[testng] 12:21:01,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 12:21:01,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:21:01,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_12-21-01.log]
[testng] 12:21:01,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fffc0a7 - End of configuration.
[testng] [2024-12-18 12:21:04,398] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A1.tif:
[testng] 12:21:04,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 12:21:04,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:21:04,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-18_12-21-04.log]
[testng] 12:21:04,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ca105f - End of configuration.
[testng] [2024-12-18 12:21:07,181] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif:
[testng] 12:21:07,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 12:21:07,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:21:07,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-18_12-21-07.log]
[testng] 12:21:07,182 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73596ff3 - End of configuration.
[testng] [2024-12-18 12:21:09,575] [pool-1-thread-4] Initializing /data/converted/thomas/test_axiocam_3_1.tif:
[testng] 12:21:09,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 12:21:09,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:21:09,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-18_12-21-09.log]
[testng] 12:21:09,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1661ae02 - End of configuration.
[testng] [2024-12-18 12:21:11,485] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif:
[testng] 12:21:11,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 12:21:11,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:21:11,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-18_12-21-11.log]
[testng] 12:21:11,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1de0401e - End of configuration.
[testng] [2024-12-18 12:21:14,601] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif:
[testng] 12:21:14,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 12:21:14,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 12:21:14,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_12-21-14.log]
[testng] 12:21:14,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62ad0087 - End of configuration.
[testng] [2024-12-18 12:22:02,516] [pool-1-thread-12] Initializing /data/converted/darren/section0001_w1.tif:
[testng] [2024-12-18 12:22:18,451] [pool-1-thread-4] Initializing /data/scott/Slide133-11.tif:
[testng] [2024-12-18 12:22:21,728] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A2.tif:
[testng] [2024-12-18 12:22:35,504] [pool-1-thread-8] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif:
[testng] [2024-12-18 12:22:54,615] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif:
[testng] [2024-12-18 12:23:15,090] [pool-1-thread-4] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif:
[testng] [2024-12-18 12:23:25,605] [pool-1-thread-6] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif:
[testng] [2024-12-18 12:24:02,423] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009-0004.tif:
[testng] [2024-12-18 12:24:41,983] [pool-1-thread-1] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif:
[testng] [2024-12-18 12:27:18,793] [pool-1-thread-5] Initializing /data/converted/dietmar/137.tif:
[testng] [2024-12-18 12:27:59,961] [pool-1-thread-6] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif:
[testng] [2024-12-18 12:31:47,085] [pool-1-thread-8] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif:
[testng] [2024-12-18 12:32:42,538] [pool-1-thread-8] Initializing /data/converted/david/snap-181518-0001.tif:
[testng] [2024-12-18 12:33:29,733] [pool-1-thread-8] Initializing /data/converted/dietmar/138.tif:
[testng] [2024-12-18 12:36:45,041] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif:
[testng] [2024-12-18 12:37:15,124] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009_0022.tif:
[testng] [2024-12-18 12:38:20,238] [pool-1-thread-2] Initializing /data/converted/monica/Monica_elegans_movie.tif:
[testng] [2024-12-18 12:38:44,072] [pool-1-thread-7] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif:
[testng] [2024-12-18 12:39:44,155] [pool-1-thread-12] Initializing /data/converted/michel/d.tif:
[testng] [2024-12-18 12:40:49,961] [pool-1-thread-12] Initializing /data/converted/miso/Aufnahme-184058-0002.tif:
[testng] [2024-12-18 12:41:34,275] [pool-1-thread-12] Initializing /data/converted/rolf/example_1-2010_11_25.tif:
[testng] [2024-12-18 12:42:23,164] [pool-1-thread-12] Initializing /data/converted/darren/section0002_w1.tif:
[testng] [2024-12-18 12:43:02,608] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif:
[testng] [2024-12-18 12:43:08,022] [pool-1-thread-12] Initializing /data/converted/dietmar/dapi-texasred-0015.tif:
[testng] [2024-12-18 12:43:25,772] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif:
[testng] [2024-12-18 12:43:29,230] [pool-1-thread-4] Initializing /data/converted/converted/damian.tif:
[testng] [2024-12-18 12:44:11,023] [pool-1-thread-4] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif:
[testng] [2024-12-18 12:44:22,631] [pool-1-thread-11] Initializing /data/converted/michel/e.tif:
[testng] [2024-12-18 12:45:23,217] [pool-1-thread-7] Initializing /data/scott/Slide133-08.tif:
[testng] [2024-12-18 12:47:08,952] [pool-1-thread-11] Initializing /data/converted/strand/2Colors1Plane.tif:
[testng] [2024-12-18 12:47:23,881] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif:
[testng] [2024-12-18 12:48:28,519] [pool-1-thread-1] Initializing /data/converted/stephan/notok2.tif:
[testng] [2024-12-18 12:49:33,263] [pool-1-thread-8] Initializing /data/converted/karsten/247096n3s3s9.tif:
[testng] [2024-12-18 12:51:06,695] [pool-1-thread-11] Initializing /data/converted/lior/live+cf5b.tif:
[testng] [2024-12-18 12:54:27,406] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif:
[testng] [2024-12-18 12:56:30,183] [pool-1-thread-1] Initializing /data/converted/lior/live+cf2b.tif:
[testng] [2024-12-18 12:58:56,955] [pool-1-thread-8] Initializing /data/converted/rolf/example_2-2010_11_25.tif:
[testng] [2024-12-18 13:02:15,807] [pool-1-thread-1] Initializing /data/scott/Slide133-01.tif:
[testng] [2024-12-18 13:03:05,262] [pool-1-thread-8] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif:
[testng] [2024-12-18 13:04:51,298] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif:
[testng] [2024-12-18 13:05:20,531] [pool-1-thread-8] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif:
[testng] [2024-12-18 13:06:17,686] [pool-1-thread-12] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif:
[testng] [2024-12-18 13:06:41,024] [pool-1-thread-9] Initializing /data/converted/michel/a.tif:
[testng] [2024-12-18 13:09:26,348] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif:
[testng] [2024-12-18 13:15:17,639] [pool-1-thread-10] Initializing /data/converted/markus/30channels_exposure-series.tif:
[testng] [2024-12-18 13:19:22,624] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama.tif:
[testng] [2024-12-18 13:21:20,732] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif:
[testng] [2024-12-18 13:22:16,044] [pool-1-thread-3] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif:
[testng] [2024-12-18 13:27:01,391] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif:
[testng] [2024-12-18 13:27:51,209] [pool-1-thread-6] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif:
[testng] [2024-12-18 13:33:35,465] [pool-1-thread-7] Initializing /data/converted/converted/damian-compressed.tif:
[testng] [2024-12-18 13:34:58,067] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif:
[testng] [2024-12-18 13:38:57,227] [pool-1-thread-7] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif:
[testng] [2024-12-18 13:43:29,344] [pool-1-thread-4] Initializing /data/converted/converted/2chz.tif:
[testng] [2024-12-18 13:45:44,303] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif:
[testng] [2024-12-18 13:50:00,072] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif:
[testng] [2024-12-18 13:53:09,560] [pool-1-thread-1] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif:
[testng] [2024-12-18 13:53:54,199] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif:
[testng] [2024-12-18 13:55:39,007] [pool-1-thread-3] Initializing /data/converted/othmar/z-stack.tif:
[testng] [2024-12-18 13:56:11,680] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif:
[testng] [2024-12-18 13:57:51,248] [pool-1-thread-7] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif:
[testng] [2024-12-18 13:57:55,085] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif:
[testng] [2024-12-18 13:59:41,377] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009-0001a.tif:
[testng] [2024-12-18 14:00:15,347] [pool-1-thread-7] Initializing /data/converted/markus/HighSpeedParas.tif:
[testng] [2024-12-18 14:00:52,132] [pool-1-thread-5] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif:
[testng] [2024-12-18 14:03:48,698] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif:
[testng] [2024-12-18 14:05:36,014] [pool-1-thread-10] Initializing /data/converted/converted/2chzt.tif:
[testng] 14:06:36,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 14:06:36,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:06:36,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_14-06-36.log]
[testng] 14:06:36,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c54bf67 - End of configuration.
[testng] [2024-12-18 14:08:43,647] [pool-1-thread-11] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif:
[testng] [2024-12-18 14:12:56,023] [pool-1-thread-8] Initializing /data/converted/sebastien/F1.tif:
[testng] 14:13:12,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 14:13:12,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 14:13:12,708 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_14-13-12.log]
[testng] 14:13:12,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@da2f1eb - End of configuration.
[testng] [2024-12-18 14:13:26,979] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif:
[testng] [2024-12-18 14:22:39,514] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif:
[testng] [2024-12-18 14:23:06,406] [pool-1-thread-4] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif:
[testng] [2024-12-18 14:23:45,251] [pool-1-thread-8] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif:
[testng] [2024-12-18 14:23:51,204] [pool-1-thread-12] Initializing /data/converted/eirinn/demo-tile.tif:
[testng] [2024-12-18 14:25:07,875] [pool-1-thread-12] Initializing /data/scott/Slide133-04.tif:
[testng] [2024-12-18 14:25:58,408] [pool-1-thread-12] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif:
[testng] [2024-12-18 14:26:43,460] [pool-1-thread-4] Initializing /data/converted/jeffrey/750-30-03.tif:
[testng] [2024-12-18 14:27:54,503] [pool-1-thread-4] Initializing /data/converted/dan/zstack_convalaria.tif:
[testng] [2024-12-18 14:28:54,016] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif:
[testng] [2024-12-18 14:30:49,710] [pool-1-thread-3] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif:
[testng] [2024-12-18 14:32:52,524] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif:
[testng] [2024-12-18 14:33:49,325] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif:
[testng] [2024-12-18 14:34:30,839] [pool-1-thread-12] Initializing /data/converted/markus/Long_TL_CElegans.tif:
[testng] [2024-12-18 14:34:52,351] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif:
[testng] [2024-12-18 14:39:31,264] [pool-1-thread-6] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif:
[testng] [2024-12-18 14:41:39,546] [pool-1-thread-6] Initializing /data/converted/karsten/Bild1.tif:
[testng] [2024-12-18 14:42:34,965] [pool-1-thread-6] Initializing /data/converted/kelsey/650x514BW.tif:
[testng] [2024-12-18 14:43:15,747] [pool-1-thread-6] Initializing /data/converted/converted/mri-stack.tif:
[testng] [2024-12-18 14:43:55,234] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif:
[testng] [2024-12-18 14:45:14,820] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif:
[testng] [2024-12-18 14:46:09,301] [pool-1-thread-11] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif:
[testng] [2024-12-18 14:50:32,359] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif:
[testng] [2024-12-18 14:50:40,252] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif:
[testng] [2024-12-18 14:52:54,919] [pool-1-thread-9] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif:
[testng] [2024-12-18 15:06:45,496] [pool-1-thread-5] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif:
[testng] [2024-12-18 15:21:22,502] [pool-1-thread-9] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif:
[testng] [2024-12-18 15:24:10,637] [pool-1-thread-9] Initializing /data/converted/michel/b.tif:
[testng] [2024-12-18 15:27:00,386] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif:
[testng] [2024-12-18 15:29:28,146] [pool-1-thread-9] Initializing /data/converted/nicolas/image.tif:
[testng] [2024-12-18 15:30:56,982] [pool-1-thread-9] Initializing /data/converted/vladan/vladan.tif:
[testng] [2024-12-18 15:32:41,105] [pool-1-thread-11] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif:
[testng] [2024-12-18 15:33:16,015] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif:
[testng] [2024-12-18 15:34:00,094] [pool-1-thread-4] Initializing /data/converted/karsten/Bild2.tif:
[testng] [2024-12-18 15:34:09,907] [pool-1-thread-6] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif:
[testng] 15:35:35,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 15:35:35,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 15:35:35,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-18_15-35-35.log]
[testng] 15:35:35,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b8316ed - End of configuration.
[testng] [2024-12-18 15:38:45,268] [pool-1-thread-6] Initializing /data/converted/susan/BY4741NQ2.tif:
[testng] [2024-12-18 15:41:22,899] [pool-1-thread-4] Initializing /data/converted/kelsey/1300x1030BW.tif:
[testng] [2024-12-18 15:45:22,537] [pool-1-thread-6] Initializing /data/dorai/F_ZImage10_(X10)_C.tif:
[testng] [2024-12-18 15:47:27,069] [pool-1-thread-4] Initializing /data/converted/othmar/mozaic.tif:
[testng] [2024-12-18 15:51:49,558] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif:
[testng] 16:00:46,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 16:00:46,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:00:46,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-18_16-00-46.log]
[testng] 16:00:46,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73638f67 - End of configuration.
[testng] [2024-12-18 16:01:59,849] [pool-1-thread-1] Initializing /data/converted/michel/c.tif:
[testng] 16:02:01,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 16:02:01,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:02:01,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-18_16-02-01.log]
[testng] 16:02:01,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4946aa3f - End of configuration.
[testng] [2024-12-18 16:03:14,442] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif:
[testng] [2024-12-18 16:03:52,102] [pool-1-thread-9] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif:
[testng] [2024-12-18 16:03:55,045] [pool-1-thread-4] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif:
[testng] 16:12:25,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 16:12:25,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:12:25,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-18_16-12-25.log]
[testng] 16:12:25,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@671cc0b3 - End of configuration.
[testng] 16:33:24,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 16:33:24,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 16:33:24,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-18_16-33-24.log]
[testng] 16:33:24,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2704c911 - End of configuration.
[testng] 17:39:56,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 17:39:56,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:39:56,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-18_17-39-56.log]
[testng] 17:39:56,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64365062 - End of configuration.
[testng] 17:44:13,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 17:44:13,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 17:44:13,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-18_17-44-13.log]
[testng] 17:44:13,413 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e13a74 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 6625, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 338 minutes 10 seconds
Finished: SUCCESS