Started by upstream project "BIOFORMATS-test-repo" build number 295
originally caused by:
Started by upstream project "Trigger" build number 314
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins16757732767459541263.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46658_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:35:03,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:35:03,606 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 01:35:03,606 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:35:03,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:35:03,607 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:35:03,607 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:35:03,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:35:03,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:35:03,608 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:35:03,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:35:03,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:35:03,609 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:35:03,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:35:03,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:35:03,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:35:03,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:35:03,866 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:35:03,866 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:35:03,866 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:35:03,867 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:35:03,867 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 01:35:03,868 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 01:35:03,868 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 260 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-19 01:35:03,877] [main] java.version = 21
[testng] 01:35:03,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:35:03,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:35:03,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-19_01-35-03.log]
[testng] 01:35:03,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-12-19 01:35:03,945] [main] testng.directory = /data
[testng] [2024-12-19 01:35:03,945] [main] testng.configDirectory = /config
[testng] [2024-12-19 01:35:04,011] [main] testng.multiplier = 1.0
[testng] [2024-12-19 01:35:04,012] [main] testng.in-memory = false
[testng] [2024-12-19 01:35:04,012] [main] testng.allow-missing = false
[testng] [2024-12-19 01:35:04,012] [main] user.language = en
[testng] [2024-12-19 01:35:04,013] [main] user.country = ${user.country}
[testng] [2024-12-19 01:35:04,013] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-19 01:35:20,385] [main] ----------------------------------------
[testng] [2024-12-19 01:35:20,385] [main] Total files: 40
[testng] [2024-12-19 01:35:20,385] [main] Scan time: 16.372 s (409 ms/file)
[testng] [2024-12-19 01:35:20,386] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 38 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-19 01:36:54,268] [pool-1-thread-1] Initializing /data/sample-avis/extra-chunk/HyperStack.avi:
[testng] 01:36:54,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:36:54,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:54,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-19_01-36-54.log]
[testng] 01:36:54,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@609ab961 - End of configuration.
[testng] [2024-12-19 01:36:54,932] [pool-1-thread-12] Initializing /data/curtis/mri-stack-bf.avi:
[testng] 01:36:54,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:36:54,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:54,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-19_01-36-54.log]
[testng] 01:36:54,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a00284c - End of configuration.
[testng] [2024-12-19 01:36:55,741] [pool-1-thread-11] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi:
[testng] 01:36:55,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:36:55,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:55,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-19_01-36-55.log]
[testng] 01:36:55,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@695a231b - End of configuration.
[testng] [2024-12-19 01:36:56,613] [pool-1-thread-10] Initializing /data/curtis/mri-stack-ij-old.avi:
[testng] 01:36:56,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:36:56,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:56,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-19_01-36-56.log]
[testng] 01:36:56,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bad6ba - End of configuration.
[testng] [2024-12-19 01:36:57,904] [pool-1-thread-9] Initializing /data/qa-5019/nemo-2_1_.avi:
[testng] 01:36:57,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:36:57,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:57,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-19_01-36-57.log]
[testng] 01:36:57,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a6710df - End of configuration.
[testng] [2024-12-19 01:36:58,634] [pool-1-thread-8] Initializing /data/jae/20xD_5minfor14h.avi:
[testng] 01:36:58,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:36:58,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:58,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-19_01-36-58.log]
[testng] 01:36:58,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c2ffe1b - End of configuration.
[testng] [2024-12-19 01:36:59,373] [pool-1-thread-7] Initializing /data/chip_avi/Level004-WA-116.avi:
[testng] 01:36:59,373 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:36:59,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:36:59,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-19_01-36-59.log]
[testng] 01:36:59,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a40a8f - End of configuration.
[testng] [2024-12-19 01:37:00,228] [pool-1-thread-6] Initializing /data/curtis/mri-stack-ij-new.avi:
[testng] 01:37:00,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:37:00,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:00,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-19_01-37-00.log]
[testng] 01:37:00,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bb8c9ec - End of configuration.
[testng] [2024-12-19 01:37:00,921] [pool-1-thread-5] Initializing /data/roger/spheroid1.lsm movie.avi:
[testng] 01:37:00,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:37:00,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:00,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-19_01-37-00.log]
[testng] 01:37:00,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a6650aa - End of configuration.
[testng] [2024-12-19 01:37:03,501] [pool-1-thread-4] Initializing /data/ascb/TIRF.avi:
[testng] 01:37:03,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:37:03,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:03,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-19_01-37-03.log]
[testng] 01:37:03,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d6a7842 - End of configuration.
[testng] [2024-12-19 01:37:04,196] [pool-1-thread-3] Initializing /data/kurt/63x_6um.avi:
[testng] 01:37:04,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:37:04,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:04,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-19_01-37-04.log]
[testng] 01:37:04,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38bebe49 - End of configuration.
[testng] [2024-12-19 01:37:05,027] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 3.avi:
[testng] 01:37:05,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:37:05,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:37:05,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-19_01-37-05.log]
[testng] 01:37:05,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31baf4ff - End of configuration.
[testng] [2024-12-19 01:37:13,644] [pool-1-thread-1] Initializing /data/simon/24_bit_problem.avi:
[testng] [2024-12-19 01:37:14,349] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie.avi:
[testng] [2024-12-19 01:37:15,136] [pool-1-thread-12] Initializing /data/qa-11011/M-flow10001.avi:
[testng] [2024-12-19 01:37:16,232] [pool-1-thread-10] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi:
[testng] [2024-12-19 01:37:17,152] [pool-1-thread-6] Initializing /data/chris/APZ04_009.avi:
[testng] [2024-12-19 01:37:18,878] [pool-1-thread-7] Initializing /data/qa-5019/nemo-2_10_20.avi:
[testng] [2024-12-19 01:37:19,742] [pool-1-thread-9] Initializing /data/kurt/40x_6um_2.avi:
[testng] [2024-12-19 01:37:20,692] [pool-1-thread-2] Initializing /data/prairie/cornea dc and macs.AVI:
[testng] [2024-12-19 01:37:21,569] [pool-1-thread-4] Initializing /data/william/worm.avi:
[testng] [2024-12-19 01:37:22,387] [pool-1-thread-5] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi:
[testng] [2024-12-19 01:37:23,391] [pool-1-thread-3] Initializing /data/chip_avi/Level002-DB-090.avi:
[testng] [2024-12-19 01:37:24,063] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 2.avi:
[testng] [2024-12-19 01:37:29,654] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi:
[testng] [2024-12-19 01:37:30,459] [pool-1-thread-10] Initializing /data/chip_avi/Level003-DB-089.avi:
[testng] [2024-12-19 01:37:31,253] [pool-1-thread-3] Initializing /data/kurt/40x_6um.avi:
[testng] [2024-12-19 01:37:32,049] [pool-1-thread-2] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi:
[testng] [2024-12-19 01:37:33,049] [pool-1-thread-7] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi:
[testng] [2024-12-19 01:37:33,909] [pool-1-thread-11] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi:
[testng] [2024-12-19 01:37:34,576] [pool-1-thread-1] Initializing /data/qa-7450/MVI_3610.AVI:
[testng] [2024-12-19 01:37:35,334] [pool-1-thread-9] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi:
[testng] [2024-12-19 01:37:35,948] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 4.avi:
[testng] [2024-12-19 01:37:36,640] [pool-1-thread-12] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi:
[testng] [2024-12-19 01:37:41,612] [pool-1-thread-5] Initializing /data/chip_avi/Level001-ES-083.avi:
[testng] [2024-12-19 01:37:46,736] [pool-1-thread-6] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi:
[testng] [2024-12-19 01:37:48,319] [pool-1-thread-11] Initializing /data/roger/spheroid1-crop.lsm movie.avi:
[testng] [2024-12-19 01:37:48,955] [pool-1-thread-9] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 2014, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 3 minutes 10 seconds
Finished: SUCCESS