Started by upstream project "BIOFORMATS-test-repo" build number 296
originally caused by:
Started by upstream project "Trigger" build number 315
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5628532251381225203.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46738_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:22:14,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:22:14,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:22:14,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:14,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:14,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:22:14,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:22:14,258 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:22:14,258 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:14,258 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:14,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:22:14,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:22:14,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:22:14,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:22:14,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:22:14,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:22:14,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:22:14,515 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:22:14,515 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:22:14,515 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:22:14,515 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:22:14,515 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:22:14,516 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:22:14,516 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-20 00:22:14,526] [main] java.version = 1.8.0_342
[testng] 00:22:14,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:22:14,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:14,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_00-22-14.log]
[testng] 00:22:14,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-20 00:22:14,584] [main] testng.directory = /data
[testng] [2024-12-20 00:22:14,584] [main] testng.configDirectory = /config
[testng] [2024-12-20 00:22:14,596] [main] testng.multiplier = 1.0
[testng] [2024-12-20 00:22:14,596] [main] testng.in-memory = false
[testng] [2024-12-20 00:22:14,596] [main] testng.allow-missing = false
[testng] [2024-12-20 00:22:14,596] [main] user.language = en
[testng] [2024-12-20 00:22:14,596] [main] user.country = ${user.country}
[testng] [2024-12-20 00:22:14,596] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-20 00:22:15,445] [main] ----------------------------------------
[testng] [2024-12-20 00:22:15,445] [main] Total files: 36
[testng] [2024-12-20 00:22:15,445] [main] Scan time: 0.849 s (23 ms/file)
[testng] [2024-12-20 00:22:15,445] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 35 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-20 00:22:17,151] [pool-1-thread-1] Initializing /data/generated/mri-stack10.pcx:
[testng] 00:22:17,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:22:17,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_00-22-17.log]
[testng] 00:22:17,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d85a870 - End of configuration.
[testng] [2024-12-20 00:22:17,206] [pool-1-thread-12] Initializing /data/josh/Screenshots/deltavision.pcx:
[testng] 00:22:17,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:22:17,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,207 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_00-22-17.log]
[testng] 00:22:17,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b329980 - End of configuration.
[testng] [2024-12-20 00:22:17,223] [pool-1-thread-11] Initializing /data/generated/mri-stack14.pcx:
[testng] 00:22:17,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:22:17,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_00-22-17.log]
[testng] 00:22:17,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@191af5ab - End of configuration.
[testng] [2024-12-20 00:22:17,235] [pool-1-thread-10] Initializing /data/generated/mri-stack26.pcx:
[testng] 00:22:17,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:22:17,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_00-22-17.log]
[testng] 00:22:17,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1118801a - End of configuration.
[testng] [2024-12-20 00:22:17,247] [pool-1-thread-9] Initializing /data/generated/mri-stack4.pcx:
[testng] 00:22:17,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:22:17,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_00-22-17.log]
[testng] 00:22:17,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f938b7c - End of configuration.
[testng] [2024-12-20 00:22:17,259] [pool-1-thread-8] Initializing /data/generated/mri-stack0.pcx:
[testng] 00:22:17,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:22:17,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_00-22-17.log]
[testng] 00:22:17,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67b7b26e - End of configuration.
[testng] [2024-12-20 00:22:17,271] [pool-1-thread-7] Initializing /data/josh/Screenshots/leica-lif.pcx:
[testng] 00:22:17,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:22:17,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_00-22-17.log]
[testng] 00:22:17,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47bd55a2 - End of configuration.
[testng] [2024-12-20 00:22:17,285] [pool-1-thread-6] Initializing /data/generated/mri-stack25.pcx:
[testng] 00:22:17,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:22:17,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_00-22-17.log]
[testng] 00:22:17,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76a818e - End of configuration.
[testng] [2024-12-20 00:22:17,296] [pool-1-thread-5] Initializing /data/generated/mri-stack12.pcx:
[testng] 00:22:17,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:22:17,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_00-22-17.log]
[testng] 00:22:17,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b2423e4 - End of configuration.
[testng] [2024-12-20 00:22:17,311] [pool-1-thread-4] Initializing /data/generated/mri-stack17.pcx:
[testng] 00:22:17,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:22:17,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_00-22-17.log]
[testng] 00:22:17,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@186f9126 - End of configuration.
[testng] [2024-12-20 00:22:17,328] [pool-1-thread-3] Initializing /data/generated/mri-stack15.pcx:
[testng] 00:22:17,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:22:17,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_00-22-17.log]
[testng] 00:22:17,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bd297f9 - End of configuration.
[testng] [2024-12-20 00:22:17,342] [pool-1-thread-2] Initializing /data/generated/mri-stack5.pcx:
[testng] 00:22:17,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:22:17,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:17,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_00-22-17.log]
[testng] 00:22:17,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@235bfa3d - End of configuration.
[testng] [2024-12-20 00:22:20,154] [pool-1-thread-2] Initializing /data/generated/mri-stack20.pcx:
[testng] [2024-12-20 00:22:20,168] [pool-1-thread-5] Initializing /data/generated/mri-stack16.pcx:
[testng] [2024-12-20 00:22:20,178] [pool-1-thread-9] Initializing /data/josh/Screenshots/epscolor.pcx:
[testng] [2024-12-20 00:22:20,202] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx:
[testng] [2024-12-20 00:22:20,212] [pool-1-thread-3] Initializing /data/josh/Screenshots/fv1000color.pcx:
[testng] [2024-12-20 00:22:20,226] [pool-1-thread-10] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx:
[testng] [2024-12-20 00:22:20,242] [pool-1-thread-8] Initializing /data/generated/mri-stack21.pcx:
[testng] [2024-12-20 00:22:20,256] [pool-1-thread-4] Initializing /data/generated/mri-stack19.pcx:
[testng] [2024-12-20 00:22:20,273] [pool-1-thread-11] Initializing /data/josh/Screenshots/nd2 color.pcx:
[testng] [2024-12-20 00:22:20,288] [pool-1-thread-6] Initializing /data/generated/mri-stack8.pcx:
[testng] [2024-12-20 00:22:20,301] [pool-1-thread-7] Initializing /data/generated/mri-stack7.pcx:
[testng] [2024-12-20 00:22:20,311] [pool-1-thread-12] Initializing /data/generated/mri-stack24.pcx:
[testng] [2024-12-20 00:22:21,551] [pool-1-thread-8] Initializing /data/generated/mri-stack18.pcx:
[testng] [2024-12-20 00:22:21,639] [pool-1-thread-7] Initializing /data/generated/mri-stack2.pcx:
[testng] [2024-12-20 00:22:21,682] [pool-1-thread-1] Initializing /data/generated/mri-stack22.pcx:
[testng] [2024-12-20 00:22:21,715] [pool-1-thread-4] Initializing /data/generated/mri-stack9.pcx:
[testng] [2024-12-20 00:22:21,739] [pool-1-thread-6] Initializing /data/generated/mri-stack3.pcx:
[testng] [2024-12-20 00:22:21,762] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx:
[testng] [2024-12-20 00:22:21,784] [pool-1-thread-2] Initializing /data/generated/mri-stack6.pcx:
[testng] [2024-12-20 00:22:21,806] [pool-1-thread-5] Initializing /data/generated/mri-stack11.pcx:
[testng] [2024-12-20 00:22:22,113] [pool-1-thread-9] Initializing /data/generated/mri-stack1.pcx:
[testng] [2024-12-20 00:22:22,213] [pool-1-thread-10] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx:
[testng] [2024-12-20 00:22:22,334] [pool-1-thread-11] Initializing /data/josh/Screenshots/biorad color off.pcx:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1855, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 12 seconds
Finished: SUCCESS