Started by upstream project "BIOFORMATS-test-repo" build number 296
originally caused by:
Started by upstream project "Trigger" build number 315
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins9687831497387713242.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46749_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:22:47,990 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:22:47,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:22:47,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:47,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:47,993 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:22:47,993 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:22:47,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:22:47,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:47,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:47,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:22:47,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:22:47,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:22:48,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:22:48,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:22:48,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:22:48,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:22:48,256 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:22:48,256 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:22:48,257 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:22:48,257 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:22:48,257 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:22:48,258 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:22:48,258 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 264 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-20 00:22:48,268] [main] java.version = 1.8.0_342
[testng] 00:22:48,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:22:48,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:48,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_00-22-48.log]
[testng] 00:22:48,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-20 00:22:48,320] [main] testng.directory = /data
[testng] [2024-12-20 00:22:48,320] [main] testng.configDirectory = /config
[testng] [2024-12-20 00:22:48,332] [main] testng.multiplier = 1.0
[testng] [2024-12-20 00:22:48,332] [main] testng.in-memory = false
[testng] [2024-12-20 00:22:48,332] [main] testng.allow-missing = false
[testng] [2024-12-20 00:22:48,332] [main] user.language = en
[testng] [2024-12-20 00:22:48,332] [main] user.country = ${user.country}
[testng] [2024-12-20 00:22:48,332] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-20 00:23:12,949] [main] ----------------------------------------
[testng] [2024-12-20 00:23:12,949] [main] Total files: 320
[testng] [2024-12-20 00:23:12,949] [main] Scan time: 24.617 s (76 ms/file)
[testng] [2024-12-20 00:23:12,949] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 196 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-20 00:37:21,674] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] 00:37:21,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:37:21,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:21,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_00-37-21.log]
[testng] 00:37:21,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a545eb - End of configuration.
[testng] [2024-12-20 00:37:23,093] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] 00:37:23,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:37:23,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:23,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_00-37-23.log]
[testng] 00:37:23,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69540b14 - End of configuration.
[testng] [2024-12-20 00:37:24,295] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] 00:37:24,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:37:24,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:24,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_00-37-24.log]
[testng] 00:37:24,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e2ccf53 - End of configuration.
[testng] [2024-12-20 00:37:25,675] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] 00:37:25,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:37:25,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:25,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_00-37-25.log]
[testng] 00:37:25,677 |-INFO in ch.qos.logback.core.sift.SiftProcessor@768a4dc8 - End of configuration.
[testng] [2024-12-20 00:37:27,435] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] 00:37:27,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:37:27,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:27,435 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_00-37-27.log]
[testng] 00:37:27,436 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53d410f9 - End of configuration.
[testng] [2024-12-20 00:37:32,365] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] 00:37:32,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:37:32,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:32,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_00-37-32.log]
[testng] 00:37:32,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d2b8769 - End of configuration.
[testng] [2024-12-20 00:37:32,985] [pool-1-thread-7] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] 00:37:32,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:37:32,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:32,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_00-37-32.log]
[testng] 00:37:32,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@423a2789 - End of configuration.
[testng] [2024-12-20 00:37:33,932] [pool-1-thread-6] Initializing /data/qa-17270/image1.oir:
[testng] 00:37:33,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:37:33,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:33,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_00-37-33.log]
[testng] 00:37:33,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a14cbf6 - End of configuration.
[testng] [2024-12-20 00:37:34,484] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] 00:37:34,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:37:34,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:34,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_00-37-34.log]
[testng] 00:37:34,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@659ed8d4 - End of configuration.
[testng] [2024-12-20 00:37:35,176] [pool-1-thread-4] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] 00:37:35,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:37:35,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:35,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_00-37-35.log]
[testng] 00:37:35,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6661189f - End of configuration.
[testng] [2024-12-20 00:37:36,064] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] 00:37:36,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:37:36,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:36,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_00-37-36.log]
[testng] 00:37:36,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d067c0a - End of configuration.
[testng] [2024-12-20 00:37:36,846] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] 00:37:36,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:37:36,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:36,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_00-37-36.log]
[testng] 00:37:36,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3974a6f0 - End of configuration.
[testng] [2024-12-20 00:37:43,494] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-12-20 00:37:47,115] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-12-20 00:37:50,946] [pool-1-thread-5] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-12-20 00:37:51,213] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-12-20 00:37:52,779] [pool-1-thread-12] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-12-20 00:37:53,776] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-12-20 00:37:58,412] [pool-1-thread-11] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-12-20 00:37:59,806] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-12-20 00:38:01,677] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-12-20 00:38:02,610] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-12-20 00:38:08,340] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-12-20 00:38:09,119] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-12-20 00:38:12,734] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-12-20 00:38:13,519] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-12-20 00:38:14,666] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-12-20 00:38:15,743] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-12-20 00:38:18,293] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-12-20 00:38:22,108] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-12-20 00:38:23,337] [pool-1-thread-2] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-12-20 00:38:48,150] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-12-20 00:38:48,873] [pool-1-thread-4] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-12-20 00:38:50,456] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-12-20 00:38:52,976] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-12-20 00:39:00,383] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-12-20 00:39:03,135] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-12-20 00:39:03,923] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-12-20 00:39:04,741] [pool-1-thread-11] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-12-20 00:39:06,948] [pool-1-thread-3] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-12-20 00:39:16,925] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-12-20 00:39:21,330] [pool-1-thread-7] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-12-20 00:39:29,242] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-12-20 00:39:30,386] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-12-20 00:39:33,174] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] [2024-12-20 00:39:34,987] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-12-20 00:39:36,588] [pool-1-thread-8] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-12-20 00:39:37,957] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-12-20 00:39:42,730] [pool-1-thread-12] Initializing /data/qa-17335/1.oir:
[testng] [2024-12-20 00:39:44,969] [pool-1-thread-1] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-12-20 00:40:27,836] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-12-20 00:40:30,243] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-12-20 00:40:31,619] [pool-1-thread-8] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-12-20 00:40:32,719] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-12-20 00:40:33,370] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-12-20 00:40:34,024] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-12-20 00:40:37,842] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-12-20 00:40:41,241] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-12-20 00:40:41,795] [pool-1-thread-3] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-12-20 00:40:42,863] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-12-20 00:40:43,444] [pool-1-thread-5] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-12-20 00:40:44,098] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-12-20 00:40:48,629] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-12-20 00:40:49,990] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-12-20 00:40:51,385] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-12-20 00:40:52,827] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-12-20 00:41:00,139] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-12-20 00:41:02,369] [pool-1-thread-3] Initializing /data/public/imagesc-105684/1202-interval_freeRun_sequence_frame.oir:
[testng] [2024-12-20 00:41:03,227] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-20 00:41:04,690] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-12-20 00:41:06,401] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-12-20 00:41:07,059] [pool-1-thread-12] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-12-20 00:42:02,056] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-12-20 00:42:04,617] [pool-1-thread-4] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-12-20 00:42:06,409] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-12-20 00:42:07,330] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-12-20 00:42:08,292] [pool-1-thread-7] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-12-20 00:42:11,390] [pool-1-thread-10] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-12-20 00:42:14,176] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-12-20 00:42:16,461] [pool-1-thread-7] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-12-20 00:42:17,792] [pool-1-thread-5] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-12-20 00:42:19,645] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-12-20 00:42:22,525] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-12-20 00:42:24,544] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-12-20 00:42:26,917] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-12-20 00:42:28,138] [pool-1-thread-3] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-12-20 00:42:28,992] [pool-1-thread-7] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-12-20 00:42:31,890] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-12-20 00:42:33,735] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-12-20 00:42:36,180] [pool-1-thread-8] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-12-20 00:46:06,503] [pool-1-thread-5] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-12-20 00:46:08,246] [pool-1-thread-4] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-12-20 00:46:10,049] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-12-20 00:46:12,010] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-12-20 00:46:17,491] [pool-1-thread-10] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-12-20 00:46:19,575] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-12-20 00:46:23,819] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-12-20 00:46:28,012] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-12-20 00:46:30,135] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-12-20 00:46:36,190] [pool-1-thread-3] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-12-20 00:46:44,026] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-12-20 00:46:49,656] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-12-20 00:46:52,308] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-12-20 00:46:53,500] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-12-20 00:47:03,094] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-12-20 00:47:17,655] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-12-20 00:47:21,661] [pool-1-thread-6] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-12-20 00:47:23,256] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-12-20 00:47:27,103] [pool-1-thread-3] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-12-20 00:47:38,588] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-12-20 00:47:40,461] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-12-20 00:47:45,693] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-12-20 00:47:48,460] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-12-20 00:47:57,324] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-12-20 00:47:59,095] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-12-20 00:48:03,263] [pool-1-thread-3] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-12-20 00:48:05,414] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-12-20 00:48:06,951] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-12-20 00:48:13,783] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-12-20 00:48:14,665] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-12-20 00:48:17,749] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-12-20 00:48:18,603] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-12-20 00:48:19,296] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-12-20 00:48:20,347] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-12-20 00:48:27,143] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-12-20 00:48:28,003] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-12-20 00:48:31,398] [pool-1-thread-3] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-12-20 00:48:47,026] [pool-1-thread-10] Initializing /data/public/imagesc-105684/1202-interval_10sec_sequence_frame.oir:
[testng] [2024-12-20 00:48:48,374] [pool-1-thread-6] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-12-20 00:48:49,857] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-12-20 00:48:57,061] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-12-20 00:49:00,209] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-20 00:49:07,261] [pool-1-thread-4] Initializing /data/olympus/XYZt.oir:
[testng] [2024-12-20 00:49:25,390] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-12-20 00:49:34,971] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-12-20 00:49:44,589] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-12-20 00:49:48,267] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-12-20 00:49:56,252] [pool-1-thread-10] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-12-20 00:49:58,864] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-12-20 00:50:00,156] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-12-20 00:50:08,437] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-12-20 00:50:09,141] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-12-20 00:50:11,117] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-12-20 00:50:15,908] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-12-20 00:50:18,648] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-12-20 00:50:20,352] [pool-1-thread-7] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-12-20 00:50:26,997] [pool-1-thread-10] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-12-20 00:50:31,494] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-12-20 00:50:32,471] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-12-20 00:50:37,869] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-12-20 00:50:44,125] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-12-20 00:50:44,743] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-12-20 00:50:49,430] [pool-1-thread-5] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-12-20 00:50:53,869] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-12-20 00:50:56,386] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-12-20 00:50:58,859] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-12-20 00:51:02,852] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-12-20 00:51:04,810] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-12-20 00:51:05,580] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-12-20 00:51:11,922] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-12-20 00:51:13,225] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-12-20 00:51:16,603] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-12-20 00:51:17,358] [pool-1-thread-9] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-12-20 00:51:20,975] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-12-20 00:51:39,654] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-12-20 00:51:40,363] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-12-20 00:51:41,944] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-12-20 00:51:45,833] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-12-20 00:51:49,846] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-12-20 00:51:51,072] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-12-20 00:51:52,736] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-12-20 00:51:54,380] [pool-1-thread-7] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-12-20 00:52:09,242] [pool-1-thread-6] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame.oir:
[testng] [2024-12-20 00:52:15,259] [pool-1-thread-4] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-12-20 00:52:18,924] [pool-1-thread-3] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-12-20 00:52:21,194] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-12-20 00:52:27,436] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-12-20 00:52:36,194] [pool-1-thread-3] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-12-20 00:52:37,487] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-12-20 00:52:39,484] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-12-20 00:52:42,520] [pool-1-thread-9] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame_z stack.oir:
[testng] [2024-12-20 00:52:48,243] [pool-1-thread-2] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-12-20 00:52:51,740] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-12-20 00:52:54,665] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-12-20 00:52:58,206] [pool-1-thread-4] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-12-20 00:53:15,799] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-12-20 00:53:21,037] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-12-20 00:53:24,109] [pool-1-thread-5] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-12-20 00:53:26,676] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-12-20 00:53:27,874] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-12-20 00:54:13,799] [pool-1-thread-3] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-12-20 00:54:15,190] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-12-20 00:54:18,777] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-12-20 00:54:22,600] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-12-20 00:54:23,730] [pool-1-thread-2] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-12-20 00:54:27,516] [pool-1-thread-9] Initializing /data/qa-17270/image1.ome.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10388, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 74 minutes 3 seconds
Finished: SUCCESS