Started by upstream project "BIOFORMATS-test-repo" build number 296
originally caused by:
Started by upstream project "Trigger" build number 315
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16841068237824370176.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46766_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:39:03,535 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:39:03,537 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:39:03,537 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:39:03,538 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:39:03,538 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:39:03,539 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:39:03,539 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:39:03,539 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:39:03,539 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:39:03,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:39:03,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:39:03,540 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:39:03,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:39:03,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:39:03,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:39:03,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:39:03,816 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:39:03,816 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:39:03,816 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:39:03,816 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:39:03,817 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:39:03,817 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:39:03,817 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-20 00:39:03,827] [main] java.version = 1.8.0_342
[testng] 00:39:03,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:39:03,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:03,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_00-39-03.log]
[testng] 00:39:03,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-20 00:39:03,884] [main] testng.directory = /data
[testng] [2024-12-20 00:39:03,884] [main] testng.configDirectory = /config
[testng] [2024-12-20 00:39:03,897] [main] testng.multiplier = 1.0
[testng] [2024-12-20 00:39:03,897] [main] testng.in-memory = false
[testng] [2024-12-20 00:39:03,897] [main] testng.allow-missing = false
[testng] [2024-12-20 00:39:03,897] [main] user.language = en
[testng] [2024-12-20 00:39:03,897] [main] user.country = ${user.country}
[testng] [2024-12-20 00:39:03,898] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-20 00:39:11,438] [main] ----------------------------------------
[testng] [2024-12-20 00:39:11,438] [main] Total files: 21
[testng] [2024-12-20 00:39:11,438] [main] Scan time: 7.54 s (359 ms/file)
[testng] [2024-12-20 00:39:11,438] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-20 00:39:39,779] [pool-1-thread-1] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 00:39:39,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:39:39,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:39,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_00-39-39.log]
[testng] 00:39:39,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69986a77 - End of configuration.
[testng] [2024-12-20 00:39:41,261] [pool-1-thread-12] Initializing /data/venu/VENU03.TIF:
[testng] 00:39:41,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:39:41,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:41,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_00-39-41.log]
[testng] 00:39:41,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fb75d5 - End of configuration.
[testng] [2024-12-20 00:39:42,565] [pool-1-thread-11] Initializing /data/venu/VENU_Five.TIF:
[testng] 00:39:42,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:39:42,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:42,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_00-39-42.log]
[testng] 00:39:42,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d1725a7 - End of configuration.
[testng] [2024-12-20 00:39:43,839] [pool-1-thread-10] Initializing /data/venu/VENU01.TIF:
[testng] 00:39:43,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:39:43,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:43,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_00-39-43.log]
[testng] 00:39:43,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13bf2605 - End of configuration.
[testng] [2024-12-20 00:39:45,281] [pool-1-thread-9] Initializing /data/venu/VENU_Seven.TIF:
[testng] 00:39:45,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:39:45,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:45,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_00-39-45.log]
[testng] 00:39:45,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c28800 - End of configuration.
[testng] [2024-12-20 00:39:46,401] [pool-1-thread-8] Initializing /data/venu/VENU02.IMG:
[testng] 00:39:46,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:39:46,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:46,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_00-39-46.log]
[testng] 00:39:46,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66edcb42 - End of configuration.
[testng] [2024-12-20 00:39:46,768] [pool-1-thread-7] Initializing /data/venu/VENU_Four.TIF:
[testng] 00:39:46,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:39:46,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:46,769 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_00-39-46.log]
[testng] 00:39:46,769 |-INFO in ch.qos.logback.core.sift.SiftProcessor@631be656 - End of configuration.
[testng] [2024-12-20 00:39:47,861] [pool-1-thread-6] Initializing /data/venu/VENU_Six.TIF:
[testng] 00:39:47,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:39:47,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:47,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_00-39-47.log]
[testng] 00:39:47,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5059a5a7 - End of configuration.
[testng] [2024-12-20 00:39:48,705] [pool-1-thread-5] Initializing /data/venu/VENU.TIF:
[testng] 00:39:48,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:39:48,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:48,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_00-39-48.log]
[testng] 00:39:48,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d7cbc - End of configuration.
[testng] [2024-12-20 00:39:49,535] [pool-1-thread-4] Initializing /data/steffen/Batman_008.tif:
[testng] 00:39:49,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:39:49,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:49,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_00-39-49.log]
[testng] 00:39:49,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79a0e2d - End of configuration.
[testng] [2024-12-20 00:39:50,601] [pool-1-thread-3] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] 00:39:50,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:39:50,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:50,601 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_00-39-50.log]
[testng] 00:39:50,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58d7afe4 - End of configuration.
[testng] [2024-12-20 00:39:51,964] [pool-1-thread-2] Initializing /data/venu/VENU03.IMG:
[testng] 00:39:51,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:39:51,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:51,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_00-39-51.log]
[testng] 00:39:51,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4028aa3f - End of configuration.
[testng] [2024-12-20 00:39:57,081] [pool-1-thread-8] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] [2024-12-20 00:39:57,898] [pool-1-thread-2] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] [2024-12-20 00:40:03,267] [pool-1-thread-9] Initializing /data/venu/VENU_Eight.TIF:
[testng] [2024-12-20 00:40:04,170] [pool-1-thread-5] Initializing /data/venu/VENU02.TIF:
[testng] [2024-12-20 00:40:05,031] [pool-1-thread-4] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] [2024-12-20 00:40:05,979] [pool-1-thread-3] Initializing /data/venu/VENU01.IMG:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 11 seconds
Finished: SUCCESS