Started by upstream project "BIOFORMATS-test-repo" build number 296
originally caused by:
Started by upstream project "Trigger" build number 315
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins16993141807747727306.sh
+ '[' biorad-gel = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46872_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 05:05:20,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:05:20,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 05:05:20,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:05:20,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:05:20,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:05:20,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:05:20,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:05:20,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:05:20,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:05:20,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:05:20,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:05:20,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:05:20,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:05:20,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:05:20,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:05:20,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:05:20,444 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:05:20,445 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:05:20,445 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:05:20,445 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:05:20,445 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 05:05:20,446 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 05:05:20,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 245 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-20 05:05:20,458] [main] java.version = 1.8.0_342
[testng] 05:05:20,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:05:20,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:05:20,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_05-05-20.log]
[testng] 05:05:20,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-20 05:05:20,506] [main] testng.directory = /data
[testng] [2024-12-20 05:05:20,506] [main] testng.configDirectory = /config
[testng] [2024-12-20 05:05:20,517] [main] testng.multiplier = 1.0
[testng] [2024-12-20 05:05:20,517] [main] testng.in-memory = false
[testng] [2024-12-20 05:05:20,518] [main] testng.allow-missing = false
[testng] [2024-12-20 05:05:20,518] [main] user.language = en
[testng] [2024-12-20 05:05:20,518] [main] user.country = ${user.country}
[testng] [2024-12-20 05:05:20,518] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-20 05:05:26,402] [main] ----------------------------------------
[testng] [2024-12-20 05:05:26,402] [main] Total files: 32
[testng] [2024-12-20 05:05:26,402] [main] Scan time: 5.884 s (183 ms/file)
[testng] [2024-12-20 05:05:26,402] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 32 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-20 05:06:16,756] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 56min:
[testng] 05:06:16,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:06:16,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:16,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_05-06-16.log]
[testng] 05:06:16,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c6e516b - End of configuration.
[testng] [2024-12-20 05:06:17,908] [pool-1-thread-12] Initializing /data/samples/Criterion.1sc:
[testng] 05:06:17,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:06:17,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:17,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_05-06-17.log]
[testng] 05:06:17,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b2c4fcc - End of configuration.
[testng] [2024-12-20 05:06:18,943] [pool-1-thread-11] Initializing /data/qa-29469/bad3.1sc:
[testng] 05:06:18,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:06:18,943 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:18,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_05-06-18.log]
[testng] 05:06:18,944 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39e2fba5 - End of configuration.
[testng] [2024-12-20 05:06:19,923] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 59min.tif:
[testng] 05:06:19,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:06:19,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:19,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_05-06-19.log]
[testng] 05:06:19,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d77977e - End of configuration.
[testng] [2024-12-20 05:06:23,462] [pool-1-thread-9] Initializing /data/keith/pg020410saur3.1sc:
[testng] 05:06:23,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:06:23,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:23,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_05-06-23.log]
[testng] 05:06:23,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a311fe6 - End of configuration.
[testng] [2024-12-20 05:06:24,440] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 56min.tif:
[testng] 05:06:24,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:06:24,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:24,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_05-06-24.log]
[testng] 05:06:24,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f37ed60 - End of configuration.
[testng] [2024-12-20 05:06:28,031] [pool-1-thread-7] Initializing /data/geert/bad example1.1sc:
[testng] 05:06:28,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:06:28,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:28,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_05-06-28.log]
[testng] 05:06:28,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bd3f10d - End of configuration.
[testng] [2024-12-20 05:06:29,067] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 57min:
[testng] 05:06:29,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:06:29,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:29,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_05-06-29.log]
[testng] 05:06:29,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5caeb4f5 - End of configuration.
[testng] [2024-12-20 05:06:30,141] [pool-1-thread-5] Initializing /data/qa-29459/bad.1sc:
[testng] 05:06:30,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:06:30,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:30,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_05-06-30.log]
[testng] 05:06:30,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@917dcd9 - End of configuration.
[testng] [2024-12-20 05:06:31,202] [pool-1-thread-4] Initializing /data/adrian/test_img.1sc:
[testng] 05:06:31,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:06:31,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:31,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_05-06-31.log]
[testng] 05:06:31,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74d2d3ef - End of configuration.
[testng] [2024-12-20 05:06:32,209] [pool-1-thread-3] Initializing /data/keith/test.1sc:
[testng] 05:06:32,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:06:32,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:32,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_05-06-32.log]
[testng] 05:06:32,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5409b0dd - End of configuration.
[testng] [2024-12-20 05:06:33,308] [pool-1-thread-2] Initializing /data/qa-29469/good.1sc:
[testng] 05:06:33,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:06:33,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:06:33,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_05-06-33.log]
[testng] 05:06:33,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21bb3ac1 - End of configuration.
[testng] [2024-12-20 05:06:42,669] [pool-1-thread-9] Initializing /data/sylvain/2009-10-23 12hr 19min.tif:
[testng] [2024-12-20 05:06:46,240] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 19min:
[testng] [2024-12-20 05:06:47,420] [pool-1-thread-4] Initializing /data/david/Opened in imageJ.tiff:
[testng] [2024-12-20 05:06:51,204] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 57min.tif:
[testng] [2024-12-20 05:06:54,605] [pool-1-thread-5] Initializing /data/keith/test2.1sc:
[testng] [2024-12-20 05:06:55,609] [pool-1-thread-12] Initializing /data/geert/bad example1.jpg:
[testng] [2024-12-20 05:06:55,947] [pool-1-thread-7] Initializing /data/qa-29469/bad2.1sc:
[testng] [2024-12-20 05:06:56,949] [pool-1-thread-6] Initializing /data/qa-29459/bad.jpg:
[testng] [2024-12-20 05:06:57,275] [pool-1-thread-1] Initializing /data/keith/PF020426MRSA v2.1sc:
[testng] [2024-12-20 05:06:58,225] [pool-1-thread-11] Initializing /data/david/Converted in Quantity One (Biorad).tiff:
[testng] [2024-12-20 05:07:09,341] [pool-1-thread-1] Initializing /data/keith/PF020328saur v3.1sc:
[testng] [2024-12-20 05:07:10,437] [pool-1-thread-5] Initializing /data/sylvain/2009-10-23 12hr 18min:
[testng] [2024-12-20 05:07:11,558] [pool-1-thread-7] Initializing /data/geert/good example1.1sc:
[testng] [2024-12-20 05:07:12,604] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 18min.tif:
[testng] [2024-12-20 05:07:16,006] [pool-1-thread-6] Initializing /data/geert/good example1.1sc.jpg:
[testng] [2024-12-20 05:07:16,335] [pool-1-thread-12] Initializing /data/david/Original Biorad Gel format file.1sc:
[testng] [2024-12-20 05:07:17,329] [pool-1-thread-10] Initializing /data/geert/bad example1.1sc.jpg:
[testng] [2024-12-20 05:07:17,737] [pool-1-thread-8] Initializing /data/qa-16880/c-src v7.1sc:
[testng] [2024-12-20 05:07:24,582] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 59min:
[testng] [2024-12-20 05:07:25,804] [pool-1-thread-7] Initializing /data/samples/imagesEight.1sc:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1696, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 18 seconds
Finished: SUCCESS