Started by upstream project "BIOFORMATS-test-repo" build number 296
originally caused by:
Started by upstream project "Trigger" build number 315
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins7212933936180488073.sh
+ '[' leica-tcs = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_46881_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 05:16:35,499 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 05:16:35,500 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 05:16:35,500 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:16:35,501 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:16:35,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:16:35,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:16:35,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:16:35,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:16:35,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:16:35,503 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:16:35,503 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:16:35,503 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:16:35,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:16:35,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:16:35,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:16:35,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:16:35,768 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:16:35,768 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:16:35,769 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:16:35,769 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:16:35,769 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 05:16:35,770 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 05:16:35,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 268 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-20 05:16:35,781] [main] java.version = 1.8.0_342
[testng] 05:16:35,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:16:35,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:16:35,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_05-16-35.log]
[testng] 05:16:35,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-20 05:16:35,836] [main] testng.directory = /data
[testng] [2024-12-20 05:16:35,837] [main] testng.configDirectory = /config
[testng] [2024-12-20 05:16:35,850] [main] testng.multiplier = 1.0
[testng] [2024-12-20 05:16:35,850] [main] testng.in-memory = false
[testng] [2024-12-20 05:16:35,850] [main] testng.allow-missing = false
[testng] [2024-12-20 05:16:35,850] [main] user.language = en
[testng] [2024-12-20 05:16:35,851] [main] user.country = ${user.country}
[testng] [2024-12-20 05:16:35,851] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-20 05:16:50,731] [main] ----------------------------------------
[testng] [2024-12-20 05:16:50,731] [main] Total files: 944
[testng] [2024-12-20 05:16:50,731] [main] Scan time: 14.88 s (15 ms/file)
[testng] [2024-12-20 05:16:50,731] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-20 05:19:27,377] [pool-1-thread-1] Initializing /data/stjude/Antoday1dblmysglGRP.tif:
[testng] 05:19:27,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:19:27,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:27,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-20_05-19-27.log]
[testng] 05:19:27,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e7ab988 - End of configuration.
[testng] [2024-12-20 05:19:29,636] [pool-1-thread-12] Initializing /data/brian/Series002_z01.tif:
[testng] 05:19:29,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:19:29,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:29,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-20_05-19-29.log]
[testng] 05:19:29,638 |-INFO in ch.qos.logback.core.sift.SiftProcessor@774922d - End of configuration.
[testng] [2024-12-20 05:19:33,300] [pool-1-thread-11] Initializing /data/brian/Series002_z00_ch00.tif:
[testng] 05:19:33,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:19:33,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:33,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-20_05-19-33.log]
[testng] 05:19:33,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fba6da3 - End of configuration.
[testng] [2024-12-20 05:19:35,810] [pool-1-thread-10] Initializing /data/primate/Leica_Image.tif:
[testng] 05:19:35,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:19:35,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:35,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-20_05-19-35.log]
[testng] 05:19:35,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509c42d4 - End of configuration.
[testng] [2024-12-20 05:19:38,173] [pool-1-thread-9] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif:
[testng] 05:19:38,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:19:38,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:19:38,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-20_05-19-38.log]
[testng] 05:19:38,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@526288c2 - End of configuration.
[testng] [2024-12-20 05:21:07,593] [pool-1-thread-8] Initializing /data/stjude/AntoDayzerocy3OVP.tif:
[testng] 05:21:07,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:21:07,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:21:07,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-20_05-21-07.log]
[testng] 05:21:07,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@687572b1 - End of configuration.
[testng] [2024-12-20 05:21:10,052] [pool-1-thread-7] Initializing /data/stjude/AntoDay4dblmyGRP.tif:
[testng] 05:21:10,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:21:10,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:21:10,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-20_05-21-10.log]
[testng] 05:21:10,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62e0abf9 - End of configuration.
[testng] [2024-12-20 05:21:12,198] [pool-1-thread-6] Initializing /data/stjude/AntoDayzerocy3GRP.tif:
[testng] 05:21:12,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:21:12,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:21:12,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-20_05-21-12.log]
[testng] 05:21:12,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30938c5c - End of configuration.
[testng] [2024-12-20 05:21:14,743] [pool-1-thread-5] Initializing /data/stjude/Antoday1dblcatsglGRP.tif:
[testng] 05:21:14,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:21:14,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:21:14,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-20_05-21-14.log]
[testng] 05:21:14,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38813c - End of configuration.
[testng] [2024-12-20 05:21:16,865] [pool-1-thread-4] Initializing /data/stjude/AntoDay1dblGRP.tif:
[testng] 05:21:16,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:21:16,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:21:16,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-20_05-21-16.log]
[testng] 05:21:16,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c8a50fd - End of configuration.
[testng] [2024-12-20 05:21:19,166] [pool-1-thread-3] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif:
[testng] 05:21:19,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:21:19,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:21:19,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-20_05-21-19.log]
[testng] 05:21:19,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43ea463a - End of configuration.
[testng] [2024-12-20 05:21:21,771] [pool-1-thread-2] Initializing /data/martin/Series028_z00_ch00.tif:
[testng] 05:21:21,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:21:21,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:21:21,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-20_05-21-21.log]
[testng] 05:21:21,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10b99891 - End of configuration.
[testng] [2024-12-20 05:21:39,491] [pool-1-thread-10] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif:
[testng] [2024-12-20 05:21:46,392] [pool-1-thread-12] Initializing /data/stjude/AntoDay4dblmy2GRP.tif:
[testng] [2024-12-20 05:21:49,429] [pool-1-thread-1] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF:
[testng] 07:26:08,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:26:08,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:26:08,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-20_07-26-08.log]
[testng] 07:26:08,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26586b74 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 129 minutes 37 seconds
Finished: SUCCESS