Started by upstream project "BIOFORMATS-test-repo" build number 298
originally caused by:
Started by upstream project "Trigger" build number 320
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins6523758397003496900.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47079_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:22:24,549 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:22:24,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:22:24,551 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:24,552 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:24,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:22:24,552 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:22:24,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:22:24,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:24,553 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:24,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:22:24,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:22:24,554 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:22:24,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:22:24,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:22:24,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:22:24,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:22:24,738 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:22:24,739 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:22:24,739 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:22:24,739 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:22:24,739 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:22:24,740 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:22:24,740 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-25 00:22:24,748] [main] java.version = 17.0.2
[testng] 00:22:24,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:22:24,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:24,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_00-22-24.log]
[testng] 00:22:24,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-25 00:22:24,793] [main] testng.directory = /data
[testng] [2024-12-25 00:22:24,793] [main] testng.configDirectory = /config
[testng] [2024-12-25 00:22:24,801] [main] testng.multiplier = 1.0
[testng] [2024-12-25 00:22:24,802] [main] testng.in-memory = false
[testng] [2024-12-25 00:22:24,802] [main] testng.allow-missing = false
[testng] [2024-12-25 00:22:24,802] [main] user.language = en
[testng] [2024-12-25 00:22:24,802] [main] user.country = ${user.country}
[testng] [2024-12-25 00:22:24,802] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-25 00:22:48,747] [main] ----------------------------------------
[testng] [2024-12-25 00:22:48,747] [main] Total files: 320
[testng] [2024-12-25 00:22:48,747] [main] Scan time: 23.945 s (74 ms/file)
[testng] [2024-12-25 00:22:48,747] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 196 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-25 00:35:59,665] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] 00:35:59,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:35:59,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:35:59,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-25_00-35-59.log]
[testng] 00:35:59,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@662c2870 - End of configuration.
[testng] [2024-12-25 00:36:00,724] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] 00:36:00,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:36:00,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:00,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-25_00-36-00.log]
[testng] 00:36:00,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e3f8d6c - End of configuration.
[testng] [2024-12-25 00:36:01,803] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] 00:36:01,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:36:01,803 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:01,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-25_00-36-01.log]
[testng] 00:36:01,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@411bd76f - End of configuration.
[testng] [2024-12-25 00:36:03,458] [pool-1-thread-10] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] 00:36:03,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:36:03,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:03,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-25_00-36-03.log]
[testng] 00:36:03,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5914e53f - End of configuration.
[testng] [2024-12-25 00:36:04,474] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] 00:36:04,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:36:04,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:04,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-25_00-36-04.log]
[testng] 00:36:04,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60f78a6c - End of configuration.
[testng] [2024-12-25 00:36:05,783] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] 00:36:05,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:36:05,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:05,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-25_00-36-05.log]
[testng] 00:36:05,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d4fd68a - End of configuration.
[testng] [2024-12-25 00:36:06,871] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] 00:36:06,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:36:06,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:06,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-25_00-36-06.log]
[testng] 00:36:06,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f471b71 - End of configuration.
[testng] [2024-12-25 00:36:07,710] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] 00:36:07,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:36:07,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:07,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-25_00-36-07.log]
[testng] 00:36:07,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61afbed8 - End of configuration.
[testng] [2024-12-25 00:36:08,634] [pool-1-thread-5] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] 00:36:08,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:36:08,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:36:08,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-25_00-36-08.log]
[testng] 00:36:08,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b57e119 - End of configuration.
[testng] [2024-12-25 00:37:01,505] [pool-1-thread-4] Initializing /data/cudmore/20190401__0005.oir:
[testng] 00:37:01,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:37:01,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:01,506 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-25_00-37-01.log]
[testng] 00:37:01,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2acd5679 - End of configuration.
[testng] [2024-12-25 00:37:06,766] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] 00:37:06,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:37:06,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:06,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-25_00-37-06.log]
[testng] 00:37:06,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ae5856a - End of configuration.
[testng] [2024-12-25 00:37:07,260] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] 00:37:07,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:37:07,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:37:07,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-25_00-37-07.log]
[testng] 00:37:07,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50b4b54e - End of configuration.
[testng] [2024-12-25 00:37:13,919] [pool-1-thread-6] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-12-25 00:37:14,411] [pool-1-thread-8] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-12-25 00:37:15,227] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-12-25 00:37:16,191] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-25 00:37:17,031] [pool-1-thread-2] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-12-25 00:37:17,698] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-12-25 00:37:18,282] [pool-1-thread-3] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-12-25 00:37:40,538] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] [2024-12-25 00:37:43,168] [pool-1-thread-9] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-12-25 00:37:47,007] [pool-1-thread-8] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-12-25 00:37:47,893] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-12-25 00:37:48,501] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-12-25 00:37:49,209] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-12-25 00:37:50,381] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-12-25 00:37:50,861] [pool-1-thread-1] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-12-25 00:37:56,187] [pool-1-thread-6] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-12-25 00:37:57,133] [pool-1-thread-12] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-12-25 00:37:58,545] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-12-25 00:37:59,054] [pool-1-thread-10] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-12-25 00:37:59,814] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-12-25 00:38:03,247] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-12-25 00:38:04,991] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-12-25 00:38:05,682] [pool-1-thread-2] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-12-25 00:38:10,357] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-12-25 00:38:11,875] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-12-25 00:38:12,461] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-12-25 00:38:14,202] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-12-25 00:38:17,500] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-12-25 00:38:19,944] [pool-1-thread-12] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-12-25 00:38:20,159] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-12-25 00:38:21,427] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-12-25 00:38:21,921] [pool-1-thread-8] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-12-25 00:38:22,388] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-12-25 00:38:23,616] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-12-25 00:38:26,568] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-12-25 00:38:27,833] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-12-25 00:38:31,561] [pool-1-thread-10] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-12-25 00:38:32,804] [pool-1-thread-7] Initializing /data/olympus/XYZt.oir:
[testng] [2024-12-25 00:38:34,629] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-12-25 00:38:35,384] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-12-25 00:38:36,772] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-12-25 00:38:40,489] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-12-25 00:38:44,614] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] [2024-12-25 00:38:46,530] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-12-25 00:38:47,603] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-12-25 00:38:50,836] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-12-25 00:38:56,211] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-12-25 00:38:58,686] [pool-1-thread-8] Initializing /data/qa-17270/alexa488.oir:
[testng] [2024-12-25 00:39:00,107] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-12-25 00:39:01,101] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-12-25 00:39:01,827] [pool-1-thread-9] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-12-25 00:39:03,298] [pool-1-thread-7] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-12-25 00:39:08,984] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-12-25 00:39:10,848] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] [2024-12-25 00:39:12,212] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-12-25 00:39:13,056] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-12-25 00:39:16,853] [pool-1-thread-12] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-12-25 00:39:18,027] [pool-1-thread-10] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-12-25 00:39:19,916] [pool-1-thread-9] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-12-25 00:39:21,021] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-12-25 00:39:22,272] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-12-25 00:39:25,920] [pool-1-thread-10] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-12-25 00:39:27,225] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-12-25 00:39:30,349] [pool-1-thread-6] Initializing /data/qa-17270/stack1.ome.tif:
[testng] [2024-12-25 00:39:33,708] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-12-25 00:39:34,291] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-12-25 00:39:37,129] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-12-25 00:39:37,826] [pool-1-thread-10] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-12-25 00:39:41,495] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-12-25 00:39:42,221] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-12-25 00:39:43,100] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] [2024-12-25 00:39:46,042] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-12-25 00:39:47,861] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-12-25 00:39:51,385] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-12-25 00:39:52,759] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info:
[testng] [2024-12-25 00:40:02,596] [pool-1-thread-1] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-12-25 00:40:05,881] [pool-1-thread-6] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-12-25 00:40:08,498] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] [2024-12-25 00:40:09,378] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-12-25 00:40:10,439] [pool-1-thread-9] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-12-25 00:40:17,020] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-12-25 00:40:18,427] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-12-25 00:40:21,499] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-12-25 00:40:26,504] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-12-25 00:40:27,492] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-12-25 00:40:29,054] [pool-1-thread-9] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame.oir:
[testng] [2024-12-25 00:40:31,811] [pool-1-thread-10] Initializing /data/qa-17335/1.oir:
[testng] [2024-12-25 00:40:32,267] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-12-25 00:40:33,158] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-12-25 00:40:33,735] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir:
[testng] [2024-12-25 00:40:36,401] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-12-25 00:40:36,933] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir:
[testng] [2024-12-25 00:40:39,176] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-12-25 00:40:39,759] [pool-1-thread-10] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-12-25 00:40:42,654] [pool-1-thread-6] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-12-25 00:40:43,999] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-12-25 00:40:44,716] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-12-25 00:40:45,564] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-12-25 00:40:46,170] [pool-1-thread-7] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-12-25 00:41:14,381] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-12-25 00:41:17,821] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-12-25 00:41:22,066] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-12-25 00:41:23,070] [pool-1-thread-6] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-12-25 00:41:24,494] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-12-25 00:41:25,375] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-12-25 00:41:27,725] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-12-25 00:41:32,968] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-12-25 00:41:33,697] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-12-25 00:41:35,822] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-12-25 00:41:37,068] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-12-25 00:41:38,073] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-12-25 00:41:40,607] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-12-25 00:41:42,388] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-25 00:41:43,846] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-12-25 00:41:44,746] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-12-25 00:41:45,856] [pool-1-thread-12] Initializing /data/public/imagesc-105684/1202-interval_10sec_sequence_frame.oir:
[testng] [2024-12-25 00:41:46,353] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-12-25 00:41:48,157] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-12-25 00:41:52,496] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-12-25 00:41:52,941] [pool-1-thread-9] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-12-25 00:41:56,295] [pool-1-thread-1] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-12-25 00:42:00,101] [pool-1-thread-9] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame_z stack.oir:
[testng] [2024-12-25 00:42:00,949] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-12-25 00:42:02,129] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-12-25 00:42:02,742] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-12-25 00:42:07,965] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-12-25 00:42:13,375] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-12-25 00:42:13,880] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-12-25 00:42:18,882] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-12-25 00:42:20,866] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-12-25 00:42:23,037] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-12-25 00:42:27,045] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-12-25 00:42:27,385] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-12-25 00:42:28,483] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-12-25 00:42:29,660] [pool-1-thread-11] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-12-25 00:42:33,382] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-12-25 00:42:34,889] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-12-25 00:42:35,851] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-12-25 00:42:36,420] [pool-1-thread-8] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] [2024-12-25 00:42:40,408] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-12-25 00:42:44,073] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-12-25 00:42:45,974] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-12-25 00:42:47,134] [pool-1-thread-8] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-12-25 00:42:48,402] [pool-1-thread-9] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-12-25 00:42:50,002] [pool-1-thread-11] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-12-25 00:42:51,857] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-12-25 00:42:54,769] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-12-25 00:42:58,286] [pool-1-thread-3] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-12-25 00:42:58,789] [pool-1-thread-1] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] [2024-12-25 00:42:59,399] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-12-25 00:43:00,690] [pool-1-thread-9] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-12-25 00:43:01,505] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-12-25 00:43:02,389] [pool-1-thread-6] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] [2024-12-25 00:43:04,389] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-12-25 00:43:07,241] [pool-1-thread-3] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-12-25 00:43:08,952] [pool-1-thread-8] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-12-25 00:43:12,452] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-12-25 00:43:14,210] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-12-25 00:43:15,890] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-12-25 00:43:19,950] [pool-1-thread-11] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-12-25 00:43:21,004] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-12-25 00:43:24,610] [pool-1-thread-9] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir:
[testng] [2024-12-25 00:43:28,029] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-12-25 00:43:29,459] [pool-1-thread-2] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-12-25 00:43:32,865] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-12-25 00:43:34,707] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-12-25 00:43:42,910] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-12-25 00:43:45,248] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-12-25 00:43:47,199] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-12-25 00:43:52,804] [pool-1-thread-11] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-12-25 00:43:58,265] [pool-1-thread-6] Initializing /data/qa-17270/image1.oir:
[testng] [2024-12-25 00:43:58,931] [pool-1-thread-2] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-12-25 00:44:01,896] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-12-25 00:44:05,066] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-12-25 00:44:12,526] [pool-1-thread-11] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-12-25 00:44:14,586] [pool-1-thread-1] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-12-25 00:44:16,501] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] [2024-12-25 00:44:17,324] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-12-25 00:44:18,461] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-12-25 00:44:24,246] [pool-1-thread-9] Initializing /data/public/imagesc-105684/1202-interval_freeRun_sequence_frame.oir:
[testng] [2024-12-25 00:44:30,032] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] [2024-12-25 00:44:31,522] [pool-1-thread-3] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-12-25 00:44:52,929] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-12-25 00:44:54,243] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.oir:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 10388, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 50 minutes 34 seconds
Finished: SUCCESS