Started by upstream project "BIOFORMATS-test-repo" build number 298 originally caused by: Started by upstream project "Trigger" build number 320 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins215585144175371328.sh + '[' lim = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47083_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:23:59,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:23:59,134 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:23:59,134 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:59,135 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:59,135 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:23:59,135 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:23:59,136 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:23:59,136 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:59,136 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:59,137 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:23:59,137 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:23:59,137 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:23:59,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:23:59,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:23:59,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:23:59,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:23:59,323 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:23:59,323 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:23:59,323 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:23:59,323 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:23:59,323 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:23:59,324 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:23:59,324 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-25 00:23:59,333] [main] java.version = 17.0.2 [testng] 00:23:59,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:23:59,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:59,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_00-23-59.log] [testng] 00:23:59,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-25 00:23:59,378] [main] testng.directory = /data [testng] [2024-12-25 00:23:59,378] [main] testng.configDirectory = /config [testng] [2024-12-25 00:23:59,386] [main] testng.multiplier = 1.0 [testng] [2024-12-25 00:23:59,387] [main] testng.in-memory = false [testng] [2024-12-25 00:23:59,387] [main] testng.allow-missing = false [testng] [2024-12-25 00:23:59,387] [main] user.language = en [testng] [2024-12-25 00:23:59,388] [main] user.country = ${user.country} [testng] [2024-12-25 00:23:59,388] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-25 00:23:59,870] [main] ---------------------------------------- [testng] [2024-12-25 00:23:59,870] [main] Total files: 21 [testng] [2024-12-25 00:23:59,870] [main] Scan time: 0.482 s (22 ms/file) [testng] [2024-12-25 00:23:59,870] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-25 00:24:07,986] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:24:07,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:24:07,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:07,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-25_00-24-07.log] [testng] 00:24:07,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1455294e - End of configuration. [testng] [2024-12-25 00:24:08,543] [pool-1-thread-12] Initializing /data/venu/Kontrolle0002.lim: [testng] 00:24:08,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:24:08,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:08,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-25_00-24-08.log] [testng] 00:24:08,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bff3c5c - End of configuration. [testng] [2024-12-25 00:24:09,035] [pool-1-thread-11] Initializing /data/venu/Kontrolle0021.lim: [testng] 00:24:09,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:24:09,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:09,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-25_00-24-09.log] [testng] 00:24:09,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@573e7e7b - End of configuration. [testng] [2024-12-25 00:24:09,828] [pool-1-thread-10] Initializing /data/venu/Kontrolle0020.lim: [testng] 00:24:09,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:24:09,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:09,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-25_00-24-09.log] [testng] 00:24:09,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d957e1e - End of configuration. [testng] [2024-12-25 00:24:10,327] [pool-1-thread-9] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:24:10,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:24:10,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:10,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-25_00-24-10.log] [testng] 00:24:10,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6637795b - End of configuration. [testng] [2024-12-25 00:24:10,809] [pool-1-thread-8] Initializing /data/venu/Kontrolle0004.lim: [testng] 00:24:10,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:24:10,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:10,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-25_00-24-10.log] [testng] 00:24:10,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4301c45 - End of configuration. [testng] [2024-12-25 00:24:11,261] [pool-1-thread-7] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:24:11,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:24:11,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:11,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-25_00-24-11.log] [testng] 00:24:11,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff965f2 - End of configuration. [testng] [2024-12-25 00:24:11,643] [pool-1-thread-6] Initializing /data/venu/Kontrolle0007.lim: [testng] 00:24:11,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:24:11,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:11,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-25_00-24-11.log] [testng] 00:24:11,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78e2920d - End of configuration. [testng] [2024-12-25 00:24:11,973] [pool-1-thread-5] Initializing /data/venu/Kontrolle0013.lim: [testng] 00:24:11,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:24:11,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:11,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-25_00-24-11.log] [testng] 00:24:11,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289eed7 - End of configuration. [testng] [2024-12-25 00:24:12,308] [pool-1-thread-4] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:24:12,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:24:12,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:12,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-25_00-24-12.log] [testng] 00:24:12,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a38dfd9 - End of configuration. [testng] [2024-12-25 00:24:12,791] [pool-1-thread-3] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:24:12,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:24:12,792 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:12,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-25_00-24-12.log] [testng] 00:24:12,793 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c316fe - End of configuration. [testng] [2024-12-25 00:24:13,400] [pool-1-thread-2] Initializing /data/venu/Kontrolle0011.lim: [testng] 00:24:13,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:24:13,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:13,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-25_00-24-13.log] [testng] 00:24:13,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69683f83 - End of configuration. [testng] [2024-12-25 00:24:20,201] [pool-1-thread-9] Initializing /data/venu/Kontrolle0019.lim: [testng] [2024-12-25 00:24:20,489] [pool-1-thread-11] Initializing /data/venu/Kontrolle0012.lim: [testng] [2024-12-25 00:24:20,832] [pool-1-thread-3] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-12-25 00:24:21,121] [pool-1-thread-12] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-12-25 00:24:21,383] [pool-1-thread-10] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-12-25 00:24:21,649] [pool-1-thread-5] Initializing /data/venu/Kontrolle0016.lim: [testng] [2024-12-25 00:24:22,035] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-12-25 00:24:22,319] [pool-1-thread-4] Initializing /data/venu/Kontrolle0001.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 29 seconds Finished: SUCCESS