Started by upstream project "BIOFORMATS-test-repo" build number 298
originally caused by:
Started by upstream project "Trigger" build number 320
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15677021751789480618.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47095_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:30:38,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:30:38,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:30:38,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:30:38,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:30:38,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:30:38,866 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:30:38,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:30:38,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:30:38,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:30:38,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:30:38,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:30:38,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:30:39,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:30:39,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:30:39,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:30:39,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:30:39,063 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:30:39,063 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:30:39,063 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:30:39,063 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:30:39,063 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:30:39,065 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:30:39,065 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-25 00:30:39,073] [main] java.version = 17.0.2
[testng] 00:30:39,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:30:39,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:39,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_00-30-39.log]
[testng] 00:30:39,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-25 00:30:39,121] [main] testng.directory = /data
[testng] [2024-12-25 00:30:39,122] [main] testng.configDirectory = /config
[testng] [2024-12-25 00:30:39,130] [main] testng.multiplier = 1.0
[testng] [2024-12-25 00:30:39,131] [main] testng.in-memory = false
[testng] [2024-12-25 00:30:39,132] [main] testng.allow-missing = false
[testng] [2024-12-25 00:30:39,132] [main] user.language = en
[testng] [2024-12-25 00:30:39,132] [main] user.country = ${user.country}
[testng] [2024-12-25 00:30:39,132] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-25 00:35:42,341] [main] ----------------------------------------
[testng] [2024-12-25 00:35:42,342] [main] Total files: 226
[testng] [2024-12-25 00:35:42,342] [main] Scan time: 303.209 s (1341 ms/file)
[testng] [2024-12-25 00:35:42,342] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-25 00:39:58,994] [pool-1-thread-1] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] 00:39:58,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:39:58,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:58,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-25_00-39-58.log]
[testng] 00:39:58,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bcf0c7c - End of configuration.
[testng] [2024-12-25 00:39:59,624] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.tif:
[testng] 00:39:59,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:39:59,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:39:59,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-25_00-39-59.log]
[testng] 00:39:59,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40d66b88 - End of configuration.
[testng] [2024-12-25 00:40:00,535] [pool-1-thread-11] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] 00:40:00,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:40:00,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:00,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-25_00-40-00.log]
[testng] 00:40:00,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bbc5e - End of configuration.
[testng] [2024-12-25 00:40:01,164] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] 00:40:01,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:40:01,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:01,165 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-25_00-40-01.log]
[testng] 00:40:01,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65752038 - End of configuration.
[testng] [2024-12-25 00:40:02,001] [pool-1-thread-9] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] 00:40:02,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:40:02,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:02,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-25_00-40-02.log]
[testng] 00:40:02,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@794b3b0a - End of configuration.
[testng] [2024-12-25 00:40:02,155] [pool-1-thread-8] Initializing /data/iplab/3t3 Cell.IPL:
[testng] 00:40:02,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:40:02,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:02,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-25_00-40-02.log]
[testng] 00:40:02,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ad6f042 - End of configuration.
[testng] [2024-12-25 00:40:02,315] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL:
[testng] 00:40:02,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:40:02,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:02,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-25_00-40-02.log]
[testng] 00:40:02,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16bb8175 - End of configuration.
[testng] [2024-12-25 00:40:02,480] [pool-1-thread-6] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] 00:40:02,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:40:02,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:02,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-25_00-40-02.log]
[testng] 00:40:02,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4660a089 - End of configuration.
[testng] [2024-12-25 00:40:02,643] [pool-1-thread-5] Initializing /data/iplab/16Bit XRay.IPL:
[testng] 00:40:02,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:40:02,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:02,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-25_00-40-02.log]
[testng] 00:40:02,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b37e9a7 - End of configuration.
[testng] [2024-12-25 00:40:02,786] [pool-1-thread-4] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] 00:40:02,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:40:02,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:02,787 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-25_00-40-02.log]
[testng] 00:40:02,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d3e9773 - End of configuration.
[testng] [2024-12-25 00:40:02,983] [pool-1-thread-3] Initializing /data/fluoview/Sample_XT.tif:
[testng] 00:40:02,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:40:02,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:02,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-25_00-40-02.log]
[testng] 00:40:02,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20945a05 - End of configuration.
[testng] [2024-12-25 00:40:03,849] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 00:40:03,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:40:03,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:40:03,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-25_00-40-03.log]
[testng] 00:40:03,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b8fb0dc - End of configuration.
[testng] [2024-12-25 00:40:08,626] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] [2024-12-25 00:40:08,863] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] [2024-12-25 00:40:09,098] [pool-1-thread-7] Initializing /data/iplab/Color Histology.IPL:
[testng] [2024-12-25 00:40:09,273] [pool-1-thread-6] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2024-12-25 00:40:10,411] [pool-1-thread-4] Initializing /data/iplab/Blend_Final.IPL:
[testng] [2024-12-25 00:40:10,549] [pool-1-thread-9] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] [2024-12-25 00:40:14,120] [pool-1-thread-7] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] [2024-12-25 00:40:14,471] [pool-1-thread-4] Initializing /data/iplab/Blend_DIC.IPL:
[testng] [2024-12-25 00:40:14,743] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] [2024-12-25 00:40:16,186] [pool-1-thread-8] Initializing /data/iplab/Actin.IPL:
[testng] [2024-12-25 00:40:17,233] [pool-1-thread-2] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2024-12-25 00:40:17,402] [pool-1-thread-3] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] [2024-12-25 00:40:18,179] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] [2024-12-25 00:40:19,246] [pool-1-thread-12] Initializing /data/iplab/Color Image.IPL:
[testng] [2024-12-25 00:40:19,713] [pool-1-thread-4] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2024-12-25 00:40:21,034] [pool-1-thread-7] Initializing /data/fluoview/SpineAnimation.avi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 minutes 58 seconds
Finished: SUCCESS