Started by upstream project "BIOFORMATS-test-repo" build number 298
originally caused by:
 Started by upstream project "Trigger" build number 320
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins15339036916895053484.sh
+ '[' fuji = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47170_merge_ci -v /uod/idr/repos/curated/fuji:/data -v /uod/idr-scratch/merge-ci/curated/fuji:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:48:11,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 03:48:11,197 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 03:48:11,197 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:48:11,198 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:48:11,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:48:11,199 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:48:11,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:48:11,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:48:11,200 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:48:11,200 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:48:11,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:48:11,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:48:11,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:48:11,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:48:11,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:48:11,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:48:11,434 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:48:11,434 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:48:11,434 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:48:11,435 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:48:11,435 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 03:48:11,436 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 03:48:11,436 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 236 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-25 03:48:11,445] [main] java.version = 17.0.2
   [testng] 03:48:11,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:48:11,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:11,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_03-48-11.log]
   [testng] 03:48:11,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-12-25 03:48:11,499] [main] testng.directory = /data
   [testng] [2024-12-25 03:48:11,500] [main] testng.configDirectory = /config
   [testng] [2024-12-25 03:48:11,509] [main] testng.multiplier = 1.0
   [testng] [2024-12-25 03:48:11,510] [main] testng.in-memory = false
   [testng] [2024-12-25 03:48:11,510] [main] testng.allow-missing = false
   [testng] [2024-12-25 03:48:11,510] [main] user.language = en
   [testng] [2024-12-25 03:48:11,510] [main] user.country = ${user.country}
   [testng] [2024-12-25 03:48:11,510] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-25 03:48:28,904] [main] ----------------------------------------
   [testng] [2024-12-25 03:48:28,904] [main] Total files: 24
   [testng] [2024-12-25 03:48:28,904] [main] Scan time: 17.394 s (724 ms/file)
   [testng] [2024-12-25 03:48:28,905] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 9 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-25 03:48:54,397] [pool-1-thread-1] Initializing /data/bernie/101110_Oligos_10min/101110_Oligos_10min.tif: 
   [testng] 03:48:54,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:48:54,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:54,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-25_03-48-54.log]
   [testng] 03:48:54,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58cf3548 - End of configuration.
   [testng] [2024-12-25 03:48:55,603] [pool-1-thread-9] Initializing /data/bernie/120411_18hrs/120411_18hrs.tif: 
   [testng] 03:48:55,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:48:55,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:55,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-25_03-48-55.log]
   [testng] 03:48:55,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c2a4b43 - End of configuration.
   [testng] [2024-12-25 03:48:56,859] [pool-1-thread-8] Initializing /data/bernie/101110_Oligos_16hour/101110_Oligos_16hour.tif: 
   [testng] 03:48:56,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:48:56,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:56,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-25_03-48-56.log]
   [testng] 03:48:56,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fe7b522 - End of configuration.
   [testng] [2024-12-25 03:48:57,941] [pool-1-thread-7] Initializing /data/bernie/090810_18hours/090810_18hours.tif: 
   [testng] 03:48:57,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:48:57,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:57,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-25_03-48-57.log]
   [testng] 03:48:57,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6156bc8f - End of configuration.
   [testng] [2024-12-25 03:48:59,102] [pool-1-thread-6] Initializing /data/bernie/070810_20hours/070810_20hours.tif: 
   [testng] 03:48:59,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:48:59,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:48:59,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-25_03-48-59.log]
   [testng] 03:48:59,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@606b1490 - End of configuration.
   [testng] [2024-12-25 03:49:00,228] [pool-1-thread-5] Initializing /data/bernie/080211_Exo_3hours/080211_Exo_3hours.tif: 
   [testng] 03:49:00,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:49:00,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:49:00,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-25_03-49-00.log]
   [testng] 03:49:00,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12dc94da - End of configuration.
   [testng] [2024-12-25 03:49:01,198] [pool-1-thread-4] Initializing /data/venu/TPN_membraneC_1sec.img: 
   [testng] 03:49:01,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:49:01,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:49:01,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-25_03-49-01.log]
   [testng] 03:49:01,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25065365 - End of configuration.
   [testng] [2024-12-25 03:49:01,634] [pool-1-thread-3] Initializing /data/bernie/101210_Substrate10mi/101210_Substrate10mi.tif: 
   [testng] 03:49:01,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:49:01,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:49:01,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-25_03-49-01.log]
   [testng] 03:49:01,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@227cee7b - End of configuration.
   [testng] [2024-12-25 03:49:02,614] [pool-1-thread-2] Initializing /data/bernie/101210_SubstrateTest/101210_SubstrateTest.tif: 
   [testng] 03:49:02,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:49:02,614 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:49:02,615 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-25_03-49-02.log]
   [testng] 03:49:02,615 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78a31396 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 477, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 1 minute 9 seconds
Finished: SUCCESS