Started by upstream project "BIOFORMATS-test-repo" build number 298
originally caused by:
 Started by upstream project "Trigger" build number 320
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins12351817324638386208.sh
+ '[' imaris = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47185_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 04:01:52,893 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 04:01:52,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 04:01:52,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:01:52,895 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 04:01:52,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 04:01:52,896 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 04:01:52,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 04:01:52,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:01:52,896 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 04:01:52,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 04:01:52,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 04:01:52,897 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 04:01:53,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 04:01:53,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 04:01:53,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 04:01:53,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 04:01:53,069 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 04:01:53,069 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 04:01:53,069 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 04:01:53,069 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 04:01:53,069 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 04:01:53,070 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 04:01:53,071 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 175 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-25 04:01:53,078] [main] java.version = 17.0.2
   [testng] 04:01:53,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 04:01:53,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:01:53,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_04-01-53.log]
   [testng] 04:01:53,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-12-25 04:01:53,121] [main] testng.directory = /data
   [testng] [2024-12-25 04:01:53,121] [main] testng.configDirectory = /config
   [testng] [2024-12-25 04:01:53,129] [main] testng.multiplier = 1.0
   [testng] [2024-12-25 04:01:53,130] [main] testng.in-memory = false
   [testng] [2024-12-25 04:01:53,130] [main] testng.allow-missing = false
   [testng] [2024-12-25 04:01:53,130] [main] user.language = en
   [testng] [2024-12-25 04:01:53,130] [main] user.country = ${user.country}
   [testng] [2024-12-25 04:01:53,130] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-25 04:02:41,457] [main] ----------------------------------------
   [testng] [2024-12-25 04:02:41,457] [main] Total files: 73
   [testng] [2024-12-25 04:02:41,457] [main] Scan time: 48.327 s (662 ms/file)
   [testng] [2024-12-25 04:02:41,457] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 63 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-25 04:03:39,860] [pool-1-thread-1] Initializing /data/generated/mri-stack-original.ims: 
   [testng] 04:03:39,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 04:03:39,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:39,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-25_04-03-39.log]
   [testng] 04:03:39,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f517415 - End of configuration.
   [testng] [2024-12-25 04:03:40,121] [pool-1-thread-12] Initializing /data/jason/imaris_5_5_demoimages/SwimmingAlgae.ims: 
   [testng] 04:03:40,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 04:03:40,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:40,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-25_04-03-40.log]
   [testng] 04:03:40,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@115d13e - End of configuration.
   [testng] [2024-12-25 04:03:40,749] [pool-1-thread-11] Initializing /data/jason/imaris_5_5_demoimages/PlantCell.ims: 
   [testng] 04:03:40,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 04:03:40,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:40,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-25_04-03-40.log]
   [testng] 04:03:40,750 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6716dd6e - End of configuration.
   [testng] [2024-12-25 04:03:41,289] [pool-1-thread-10] Initializing /data/jake/p75Cherry M2 010-3~B.ims: 
   [testng] 04:03:41,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 04:03:41,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:41,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-25_04-03-41.log]
   [testng] 04:03:41,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e881f01 - End of configuration.
   [testng] [2024-12-25 04:03:41,820] [pool-1-thread-9] Initializing /data/qa-17522/2016-12-14_08.43.34_Sample Prefix_WAINWRIGHT James_Protocol.ims: 
   [testng] 04:03:41,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 04:03:41,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:41,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-25_04-03-41.log]
   [testng] 04:03:41,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f231d - End of configuration.
   [testng] [2024-12-25 04:03:47,973] [pool-1-thread-8] Initializing /data/niko/imaris-testfile_5x5x5.ims: 
   [testng] 04:03:47,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 04:03:47,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:47,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-25_04-03-47.log]
   [testng] 04:03:47,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6af30d72 - End of configuration.
   [testng] [2024-12-25 04:03:48,520] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0004.ims: 
   [testng] 04:03:48,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 04:03:48,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:48,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-25_04-03-48.log]
   [testng] 04:03:48,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68c1838a - End of configuration.
   [testng] [2024-12-25 04:03:48,752] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0013.ims: 
   [testng] 04:03:48,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 04:03:48,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:48,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-25_04-03-48.log]
   [testng] 04:03:48,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60828ecf - End of configuration.
   [testng] [2024-12-25 04:03:48,978] [pool-1-thread-5] Initializing /data/public/davemason/Convallaria_3C_3T_2x2grid_confocal.ims: 
   [testng] 04:03:48,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 04:03:48,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:48,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-25_04-03-48.log]
   [testng] 04:03:48,979 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cc62335 - End of configuration.
   [testng] [2024-12-25 04:03:49,578] [pool-1-thread-4] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved_IMS3.ims: 
   [testng] 04:03:49,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 04:03:49,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:49,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-25_04-03-49.log]
   [testng] 04:03:49,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5670a367 - End of configuration.
   [testng] [2024-12-25 04:03:50,185] [pool-1-thread-3] Initializing /data/public/eliana/retina_large.ims: 
   [testng] 04:03:50,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 04:03:50,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:50,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-25_04-03-50.log]
   [testng] 04:03:50,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61d7a5c9 - End of configuration.
   [testng] [2024-12-25 04:03:50,788] [pool-1-thread-2] Initializing /data/public/davemason/TransFactors_2C_SRRF.ims: 
   [testng] 04:03:50,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 04:03:50,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 04:03:50,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-25_04-03-50.log]
   [testng] 04:03:50,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d4a2f79 - End of configuration.

BUILD SUCCESSFUL
Total time: 3 minutes 16 seconds
Finished: SUCCESS