Started by upstream project "BIOFORMATS-test-repo" build number 298
originally caused by:
Started by upstream project "Trigger" build number 320
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins3244681610232880718.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47201_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:52:28,218 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3315d2d7 - No custom configurators were discovered as a service.
[testng] 04:52:28,218 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3315d2d7 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:52:28,219 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3315d2d7 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:52:28,219 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:52:28,219 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:52:28,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3315d2d7 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:52:28,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3315d2d7 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:52:28,220 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3315d2d7 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:52:28,221 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:52:28,221 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:52:28,221 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:52:28,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:52:28,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:52:28,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:52:28,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:52:28,567 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:52:28,567 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:52:28,567 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:52:28,568 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:52:28,568 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 04:52:28,569 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 04:52:28,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3315d2d7 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 349 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-25 04:52:28,578] [main] java.version = 17.0.2
[testng] 04:52:28,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:52:28,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:28,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-25_04-52-28.log]
[testng] 04:52:28,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-25 04:52:28,624] [main] testng.directory = /data
[testng] [2024-12-25 04:52:28,624] [main] testng.configDirectory = /config
[testng] [2024-12-25 04:52:28,632] [main] testng.multiplier = 1.0
[testng] [2024-12-25 04:52:28,633] [main] testng.in-memory = false
[testng] [2024-12-25 04:52:28,633] [main] testng.allow-missing = false
[testng] [2024-12-25 04:52:28,633] [main] user.language = en
[testng] [2024-12-25 04:52:28,633] [main] user.country = ${user.country}
[testng] [2024-12-25 04:52:28,633] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-25 04:52:29,457] [main] ----------------------------------------
[testng] [2024-12-25 04:52:29,457] [main] Total files: 18
[testng] [2024-12-25 04:52:29,457] [main] Scan time: 0.824 s (45 ms/file)
[testng] [2024-12-25 04:52:29,457] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-25 04:52:45,602] [pool-1-thread-1] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] 04:52:45,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:52:45,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:45,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-25_04-52-45.log]
[testng] 04:52:45,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17151740 - End of configuration.
[testng] [2024-12-25 04:52:46,227] [pool-1-thread-12] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] 04:52:46,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:52:46,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:46,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-25_04-52-46.log]
[testng] 04:52:46,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dbb17 - End of configuration.
[testng] [2024-12-25 04:52:46,864] [pool-1-thread-11] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] 04:52:46,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:52:46,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:46,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-25_04-52-46.log]
[testng] 04:52:46,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bc51c46 - End of configuration.
[testng] [2024-12-25 04:52:47,471] [pool-1-thread-10] Initializing /data/misc/glossy_buttons.psd:
[testng] 04:52:47,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:52:47,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:47,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-25_04-52-47.log]
[testng] 04:52:47,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@788bd7df - End of configuration.
[testng] [2024-12-25 04:52:48,130] [pool-1-thread-9] Initializing /data/big-images/8kx8k.psd:
[testng] 04:52:48,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:52:48,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:48,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-25_04-52-48.log]
[testng] 04:52:48,132 |-INFO in ch.qos.logback.core.sift.SiftProcessor@698bbdc7 - End of configuration.
[testng] [2024-12-25 04:52:48,930] [pool-1-thread-8] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] 04:52:48,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:52:48,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:48,931 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-25_04-52-48.log]
[testng] 04:52:48,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6436e93f - End of configuration.
[testng] [2024-12-25 04:52:49,557] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] 04:52:49,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:52:49,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:49,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-25_04-52-49.log]
[testng] 04:52:49,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@102794cf - End of configuration.
[testng] [2024-12-25 04:52:50,346] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd:
[testng] 04:52:50,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:52:50,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:50,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-25_04-52-50.log]
[testng] 04:52:50,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68e9ed97 - End of configuration.
[testng] [2024-12-25 04:52:51,036] [pool-1-thread-5] Initializing /data/misc/vig_drawing_1.psd:
[testng] 04:52:51,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:52:51,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:51,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-25_04-52-51.log]
[testng] 04:52:51,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d8e83f2 - End of configuration.
[testng] [2024-12-25 04:52:51,666] [pool-1-thread-4] Initializing /data/misc/venus_composite_8bit.psd:
[testng] 04:52:51,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:52:51,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:51,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-25_04-52-51.log]
[testng] 04:52:51,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19555bfb - End of configuration.
[testng] [2024-12-25 04:52:52,301] [pool-1-thread-3] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] 04:52:52,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:52:52,302 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:52,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-25_04-52-52.log]
[testng] 04:52:52,303 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fd42f20 - End of configuration.
[testng] [2024-12-25 04:52:52,970] [pool-1-thread-2] Initializing /data/misc/glossy_orbs.psd:
[testng] 04:52:52,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:52:52,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:52:52,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-25_04-52-52.log]
[testng] 04:52:52,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a70112d - End of configuration.
[testng] [2024-12-25 04:53:01,207] [pool-1-thread-2] Initializing /data/ascb/423.psd:
[testng] [2024-12-25 04:53:02,030] [pool-1-thread-12] Initializing /data/cris/house.tif:
[testng] [2024-12-25 04:53:04,237] [pool-1-thread-10] Initializing /data/ascb/607x.psd:
[testng] [2024-12-25 04:53:04,882] [pool-1-thread-6] Initializing /data/misc/smilie.psd:
[testng] [2024-12-25 04:53:05,543] [pool-1-thread-5] Initializing /data/misc/venus_composite.psd:
[testng] [2024-12-25 04:53:06,209] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 55 seconds
Finished: SUCCESS