Started by upstream project "BIOFORMATS-test-repo" build number 299
originally caused by:
Started by upstream project "Trigger" build number 321
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins13940762670296043914.sh
+ '[' noaa-hrd = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47343_merge_ci -v /uod/idr/repos/curated/noaa-hrd:/data -v /uod/idr-scratch/merge-ci/curated/noaa-hrd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 03:57:25,843 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 03:57:25,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 03:57:25,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:57:25,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:57:25,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:57:25,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:57:25,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:57:25,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:57:25,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:57:25,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:57:25,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:57:25,848 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:57:25,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:57:25,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:57:26,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:57:26,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:57:26,027 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:57:26,027 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:57:26,027 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:57:26,028 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:57:26,028 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 03:57:26,028 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 03:57:26,028 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-26 03:57:26,037] [main] java.version = 21
[testng] 03:57:26,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:57:26,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:57:26,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-26_03-57-26.log]
[testng] 03:57:26,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-12-26 03:57:26,082] [main] testng.directory = /data
[testng] [2024-12-26 03:57:26,082] [main] testng.configDirectory = /config
[testng] [2024-12-26 03:57:26,091] [main] testng.multiplier = 1.0
[testng] [2024-12-26 03:57:26,091] [main] testng.in-memory = false
[testng] [2024-12-26 03:57:26,091] [main] testng.allow-missing = false
[testng] [2024-12-26 03:57:26,091] [main] user.language = en
[testng] [2024-12-26 03:57:26,091] [main] user.country = ${user.country}
[testng] [2024-12-26 03:57:26,091] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-26 03:57:39,122] [main] ----------------------------------------
[testng] [2024-12-26 03:57:39,122] [main] Total files: 9
[testng] [2024-12-26 03:57:39,122] [main] Scan time: 13.03 s (1447 ms/file)
[testng] [2024-12-26 03:57:39,123] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 9 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-26 03:57:53,020] [pool-1-thread-1] Initializing /data/andrew/AL021992_0824_0400:
[testng] 03:57:53,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:57:53,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:57:53,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-26_03-57-53.log]
[testng] 03:57:53,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c3250c - End of configuration.
[testng] [2024-12-26 03:57:54,450] [pool-1-thread-9] Initializing /data/andrew/AL021992_0824_0900marine:
[testng] 03:57:54,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:57:54,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:57:54,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-26_03-57-54.log]
[testng] 03:57:54,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7461d7e5 - End of configuration.
[testng] [2024-12-26 03:57:55,924] [pool-1-thread-8] Initializing /data/andrew/AL021992_0824_1100:
[testng] 03:57:55,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:57:55,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:57:55,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-26_03-57-55.log]
[testng] 03:57:55,926 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a2c10ca - End of configuration.
[testng] [2024-12-26 03:57:57,322] [pool-1-thread-7] Initializing /data/andrew/AL021992_0824_1502:
[testng] 03:57:57,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:57:57,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:57:57,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-26_03-57-57.log]
[testng] 03:57:57,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d331697 - End of configuration.
[testng] [2024-12-26 03:57:58,687] [pool-1-thread-6] Initializing /data/andrew/AL021992_0824_1100marine:
[testng] 03:57:58,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:57:58,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:57:58,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-26_03-57-58.log]
[testng] 03:57:58,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f94794b - End of configuration.
[testng] [2024-12-26 03:58:00,133] [pool-1-thread-5] Initializing /data/andrew/AL021992_0824_0400marine:
[testng] 03:58:00,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:58:00,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:58:00,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-26_03-58-00.log]
[testng] 03:58:00,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62587209 - End of configuration.
[testng] [2024-12-26 03:58:01,446] [pool-1-thread-4] Initializing /data/iris/AL112001_1009_0130:
[testng] 03:58:01,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:58:01,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:58:01,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-26_03-58-01.log]
[testng] 03:58:01,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b7b84e - End of configuration.
[testng] [2024-12-26 03:58:03,017] [pool-1-thread-3] Initializing /data/andrew/AL021992_0824_0900:
[testng] 03:58:03,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:58:03,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:58:03,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-26_03-58-03.log]
[testng] 03:58:03,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7278c9a5 - End of configuration.
[testng] [2024-12-26 03:58:04,385] [pool-1-thread-2] Initializing /data/andrew/AL021992_0824_1502marine:
[testng] 03:58:04,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:58:04,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:58:04,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-26_03-58-04.log]
[testng] 03:58:04,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f6f9b22 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 477, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 1 second
Finished: SUCCESS