Started by upstream project "BIOFORMATS-test-repo" build number 299
originally caused by:
Started by upstream project "Trigger" build number 321
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins16139500580013669753.sh
+ '[' zeiss-tiff = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47362_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:29:34,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 04:29:34,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service.
[testng] 04:29:34,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:29:34,913 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:29:34,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:29:34,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:29:34,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:29:34,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:29:34,914 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:29:34,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:29:34,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:29:34,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:29:35,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:29:35,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:29:35,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:29:35,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:29:35,098 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:29:35,098 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:29:35,098 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:29:35,099 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:29:35,099 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration.
[testng] 04:29:35,100 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point
[testng] 04:29:35,100 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-26 04:29:35,109] [main] java.version = 21
[testng] 04:29:35,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:29:35,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:29:35,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-26_04-29-35.log]
[testng] 04:29:35,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration.
[testng] [2024-12-26 04:29:35,156] [main] testng.directory = /data
[testng] [2024-12-26 04:29:35,156] [main] testng.configDirectory = /config
[testng] [2024-12-26 04:29:35,164] [main] testng.multiplier = 1.0
[testng] [2024-12-26 04:29:35,165] [main] testng.in-memory = false
[testng] [2024-12-26 04:29:35,165] [main] testng.allow-missing = false
[testng] [2024-12-26 04:29:35,165] [main] user.language = en
[testng] [2024-12-26 04:29:35,165] [main] user.country = ${user.country}
[testng] [2024-12-26 04:29:35,165] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-26 04:32:26,865] [main] ----------------------------------------
[testng] [2024-12-26 04:32:26,865] [main] Total files: 15735
[testng] [2024-12-26 04:32:26,866] [main] Scan time: 171.7 s (10 ms/file)
[testng] [2024-12-26 04:32:26,866] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 125 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-26 04:35:22,886] [pool-1-thread-1] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif:
[testng] 04:35:22,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:35:22,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:22,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-26_04-35-22.log]
[testng] 04:35:22,888 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ae7b9c5 - End of configuration.
[testng] [2024-12-26 04:35:23,699] [pool-1-thread-12] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif:
[testng] 04:35:23,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:35:23,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:23,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-26_04-35-23.log]
[testng] 04:35:23,700 |-INFO in ch.qos.logback.core.sift.SiftProcessor@259147ab - End of configuration.
[testng] [2024-12-26 04:35:24,475] [pool-1-thread-11] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif:
[testng] 04:35:24,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:35:24,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:24,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-26_04-35-24.log]
[testng] 04:35:24,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61f761f5 - End of configuration.
[testng] [2024-12-26 04:35:25,144] [pool-1-thread-10] Initializing /data/converted/michel/c.tif:
[testng] 04:35:25,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:35:25,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:25,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-26_04-35-25.log]
[testng] 04:35:25,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@463c8918 - End of configuration.
[testng] [2024-12-26 04:35:25,809] [pool-1-thread-9] Initializing /data/converted/converted/mri-stack.tif:
[testng] 04:35:25,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:35:25,809 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:25,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-26_04-35-25.log]
[testng] 04:35:25,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@120afc26 - End of configuration.
[testng] [2024-12-26 04:35:26,403] [pool-1-thread-8] Initializing /data/converted/kelsey/1300x1030BW.tif:
[testng] 04:35:26,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:35:26,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:26,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-26_04-35-26.log]
[testng] 04:35:26,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74e1e9de - End of configuration.
[testng] [2024-12-26 04:35:28,027] [pool-1-thread-7] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif:
[testng] 04:35:28,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:35:28,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:28,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-26_04-35-28.log]
[testng] 04:35:28,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31c08da7 - End of configuration.
[testng] [2024-12-26 04:35:29,789] [pool-1-thread-6] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif:
[testng] 04:35:29,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:35:29,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:29,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-26_04-35-29.log]
[testng] 04:35:29,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678b54bf - End of configuration.
[testng] [2024-12-26 04:35:31,159] [pool-1-thread-5] Initializing /data/converted/lior/live+cf2b.tif:
[testng] 04:35:31,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:35:31,159 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:31,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-26_04-35-31.log]
[testng] 04:35:31,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c967322 - End of configuration.
[testng] [2024-12-26 04:35:32,126] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif:
[testng] 04:35:32,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:35:32,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:32,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-26_04-35-32.log]
[testng] 04:35:32,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27d6d08 - End of configuration.
[testng] [2024-12-26 04:35:33,100] [pool-1-thread-3] Initializing /data/othmar/mozaic.tif:
[testng] 04:35:33,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:35:33,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:33,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-26_04-35-33.log]
[testng] 04:35:33,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@230e5553 - End of configuration.
[testng] [2024-12-26 04:35:34,417] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif:
[testng] 04:35:34,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:35:34,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:35:34,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-26_04-35-34.log]
[testng] 04:35:34,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e7cab10 - End of configuration.
[testng] [2024-12-26 04:35:45,063] [pool-1-thread-11] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif:
[testng] [2024-12-26 04:35:58,954] [pool-1-thread-9] Initializing /data/converted/dietmar/dapi-texasred-0015.tif:
[testng] [2024-12-26 04:36:01,184] [pool-1-thread-8] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif:
[testng] [2024-12-26 04:36:02,954] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif:
[testng] [2024-12-26 04:36:04,497] [pool-1-thread-7] Initializing /data/converted/converted/2chz.tif:
[testng] [2024-12-26 04:36:05,972] [pool-1-thread-6] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif:
[testng] [2024-12-26 04:36:15,868] [pool-1-thread-10] Initializing /data/converted/rachel/40K 30s A1.tif:
[testng] [2024-12-26 04:36:24,948] [pool-1-thread-5] Initializing /data/converted/nicolas/image.tif:
[testng] [2024-12-26 04:36:45,513] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif:
[testng] [2024-12-26 04:36:50,228] [pool-1-thread-5] Initializing /data/scott/Slide133-11.tif:
[testng] [2024-12-26 04:36:51,677] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009_0022.tif:
[testng] [2024-12-26 04:37:21,133] [pool-1-thread-5] Initializing /data/converted/lior/live+cf5b.tif:
[testng] [2024-12-26 04:37:29,494] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif:
[testng] [2024-12-26 04:38:11,521] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif:
[testng] [2024-12-26 04:38:46,846] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif:
[testng] [2024-12-26 04:39:13,338] [pool-1-thread-7] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif:
[testng] [2024-12-26 04:39:30,123] [pool-1-thread-3] Initializing /data/samples/mri-stack/mri-stack.tif:
[testng] [2024-12-26 04:39:41,553] [pool-1-thread-6] Initializing /data/converted/monica/Monica_elegans_movie.tif:
[testng] [2024-12-26 04:40:02,168] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama.tif:
[testng] [2024-12-26 04:40:30,590] [pool-1-thread-2] Initializing /data/converted/stephan/notok1.tif:
[testng] [2024-12-26 04:40:51,081] [pool-1-thread-3] Initializing /data/converted/converted/damian.tif:
[testng] [2024-12-26 04:41:19,353] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif:
[testng] [2024-12-26 04:42:14,874] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif:
[testng] [2024-12-26 04:42:43,338] [pool-1-thread-2] Initializing /data/converted/jeffrey/750-30-03.tif:
[testng] [2024-12-26 04:43:23,492] [pool-1-thread-2] Initializing /data/converted/joseph/E-2009-0004.tif:
[testng] [2024-12-26 04:43:35,638] [pool-1-thread-4] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif:
[testng] [2024-12-26 04:44:04,201] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif:
[testng] [2024-12-26 04:45:50,475] [pool-1-thread-1] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif:
[testng] [2024-12-26 04:46:46,974] [pool-1-thread-7] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif:
[testng] [2024-12-26 04:47:07,345] [pool-1-thread-8] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif:
[testng] [2024-12-26 04:47:12,615] [pool-1-thread-5] Initializing /data/converted/joseph/E-2009-0001a.tif:
[testng] [2024-12-26 04:47:25,828] [pool-1-thread-11] Initializing /data/converted/darren/section0002_w1.tif:
[testng] [2024-12-26 04:47:40,596] [pool-1-thread-7] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif:
[testng] [2024-12-26 04:47:59,416] [pool-1-thread-11] Initializing /data/converted/michel/d.tif:
[testng] [2024-12-26 04:48:05,938] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif:
[testng] [2024-12-26 04:48:14,857] [pool-1-thread-10] Initializing /data/converted/dan/zstack_convalaria.tif:
[testng] [2024-12-26 04:48:37,627] [pool-1-thread-11] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif:
[testng] [2024-12-26 04:48:53,333] [pool-1-thread-10] Initializing /data/dorai/F_ZImage10_(X10)_C.tif:
[testng] [2024-12-26 04:49:27,537] [pool-1-thread-10] Initializing /data/converted/markus/Long_TL_CElegans.tif:
[testng] [2024-12-26 04:52:07,468] [pool-1-thread-9] Initializing /data/converted/othmar/mozaic.tif:
[testng] [2024-12-26 04:52:34,720] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif:
[testng] [2024-12-26 04:53:55,442] [pool-1-thread-4] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif:
[testng] [2024-12-26 04:54:52,609] [pool-1-thread-3] Initializing /data/converted/converted/2chzt.tif:
[testng] [2024-12-26 04:55:14,467] [pool-1-thread-2] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif:
[testng] [2024-12-26 04:57:03,391] [pool-1-thread-11] Initializing /data/converted/rachel/40K 30s A2.tif:
[testng] [2024-12-26 04:58:01,277] [pool-1-thread-11] Initializing /data/converted/dietmar/138.tif:
[testng] [2024-12-26 04:58:04,341] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif:
[testng] [2024-12-26 04:58:42,938] [pool-1-thread-9] Initializing /data/converted/strand/2Colors1Plane.tif:
[testng] [2024-12-26 04:58:48,250] [pool-1-thread-8] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif:
[testng] [2024-12-26 04:59:37,724] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif:
[testng] [2024-12-26 05:00:06,805] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif:
[testng] [2024-12-26 05:01:21,036] [pool-1-thread-5] Initializing /data/converted/othmar/z-stack.tif:
[testng] [2024-12-26 05:05:27,220] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif:
[testng] [2024-12-26 05:09:32,514] [pool-1-thread-11] Initializing /data/converted/karsten/Bild1.tif:
[testng] [2024-12-26 05:10:11,970] [pool-1-thread-12] Initializing /data/converted/thomas/test_axiocam_3_1.tif:
[testng] [2024-12-26 05:10:24,141] [pool-1-thread-1] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif:
[testng] [2024-12-26 05:10:35,037] [pool-1-thread-8] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif:
[testng] [2024-12-26 05:10:45,275] [pool-1-thread-11] Initializing /data/converted/sebastien/test.tif:
[testng] [2024-12-26 05:11:17,954] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif:
[testng] [2024-12-26 05:11:26,597] [pool-1-thread-8] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif:
[testng] [2024-12-26 05:12:18,595] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif:
[testng] [2024-12-26 05:12:35,206] [pool-1-thread-9] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif:
[testng] [2024-12-26 05:18:04,939] [pool-1-thread-8] Initializing /data/converted/kelsey/432x342BW.tif:
[testng] [2024-12-26 05:18:48,600] [pool-1-thread-8] Initializing /data/converted/dan/adultnr1.tif:
[testng] [2024-12-26 05:19:39,152] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif:
[testng] [2024-12-26 05:20:44,891] [pool-1-thread-8] Initializing /data/converted/vladan/vladan.tif:
[testng] [2024-12-26 05:25:39,360] [pool-1-thread-12] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif:
[testng] [2024-12-26 05:25:59,377] [pool-1-thread-2] Initializing /data/converted/stephan/notok2.tif:
[testng] [2024-12-26 05:26:59,780] [pool-1-thread-11] Initializing /data/scott/Slide133-04.tif:
[testng] [2024-12-26 05:27:47,511] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif:
[testng] [2024-12-26 05:27:51,127] [pool-1-thread-11] Initializing /data/converted/susan/BY4741NQ2.tif:
[testng] [2024-12-26 05:27:54,655] [pool-1-thread-5] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif:
[testng] [2024-12-26 05:28:51,338] [pool-1-thread-11] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif:
[testng] [2024-12-26 05:28:57,816] [pool-1-thread-5] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif:
[testng] [2024-12-26 05:29:35,292] [pool-1-thread-11] Initializing /data/scott/Slide133-08.tif:
[testng] [2024-12-26 05:29:41,999] [pool-1-thread-2] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif:
[testng] [2024-12-26 05:30:23,551] [pool-1-thread-11] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif:
[testng] [2024-12-26 05:32:41,656] [pool-1-thread-8] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif:
[testng] [2024-12-26 05:33:52,524] [pool-1-thread-11] Initializing /data/converted/dietmar/137.tif:
[testng] [2024-12-26 05:34:51,687] [pool-1-thread-7] Initializing /data/converted/kelsey/650x514BW.tif:
[testng] [2024-12-26 05:35:07,491] [pool-1-thread-8] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif:
[testng] [2024-12-26 05:35:36,807] [pool-1-thread-7] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif:
[testng] [2024-12-26 05:38:56,514] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif:
[testng] [2024-12-26 05:40:46,502] [pool-1-thread-4] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif:
[testng] [2024-12-26 05:46:25,326] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif:
[testng] [2024-12-26 05:46:33,901] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif:
[testng] [2024-12-26 05:47:06,265] [pool-1-thread-4] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif:
[testng] [2024-12-26 05:47:20,087] [pool-1-thread-10] Initializing /data/converted/karsten/247096n3s3s9.tif:
[testng] [2024-12-26 05:47:41,858] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif:
[testng] [2024-12-26 05:47:55,036] [pool-1-thread-4] Initializing /data/converted/karsten/Bild2.tif:
[testng] [2024-12-26 05:48:59,564] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif:
[testng] [2024-12-26 05:50:54,375] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif:
[testng] [2024-12-26 05:51:36,243] [pool-1-thread-8] Initializing /data/converted/markus/HighSpeedParas.tif:
[testng] [2024-12-26 05:51:53,548] [pool-1-thread-3] Initializing /data/converted/eirinn/demo-tile.tif:
[testng] [2024-12-26 05:52:11,165] [pool-1-thread-12] Initializing /data/converted/markus/30channels_exposure-series.tif:
[testng] [2024-12-26 05:52:57,184] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif:
[testng] [2024-12-26 05:54:31,968] [pool-1-thread-2] Initializing /data/converted/david/snap-181518-0001.tif:
[testng] [2024-12-26 05:54:58,815] [pool-1-thread-9] Initializing /data/scott/Slide133-01.tif:
[testng] [2024-12-26 05:55:13,529] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif:
[testng] [2024-12-26 05:55:39,734] [pool-1-thread-9] Initializing /data/converted/michel/b.tif:
[testng] [2024-12-26 05:55:42,312] [pool-1-thread-12] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif:
[testng] [2024-12-26 05:56:24,964] [pool-1-thread-2] Initializing /data/converted/michel/e.tif:
[testng] [2024-12-26 05:56:27,532] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif:
[testng] [2024-12-26 05:56:40,513] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif:
[testng] [2024-12-26 05:57:48,642] [pool-1-thread-2] Initializing /data/converted/rolf/example_2-2010_11_25.tif:
[testng] [2024-12-26 05:58:30,809] [pool-1-thread-2] Initializing /data/converted/sebastien/F1.tif:
[testng] [2024-12-26 05:58:41,532] [pool-1-thread-7] Initializing /data/converted/converted/damian-compressed.tif:
[testng] [2024-12-26 05:59:15,408] [pool-1-thread-7] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif:
[testng] [2024-12-26 05:59:18,067] [pool-1-thread-11] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif:
[testng] [2024-12-26 06:00:43,378] [pool-1-thread-4] Initializing /data/converted/miso/Aufnahme-184058-0002.tif:
[testng] [2024-12-26 06:01:19,351] [pool-1-thread-4] Initializing /data/converted/michel/a.tif:
[testng] [2024-12-26 06:01:53,182] [pool-1-thread-10] Initializing /data/converted/darren/section0001_w1.tif:
[testng] [2024-12-26 06:01:55,779] [pool-1-thread-4] Initializing /data/converted/rolf/example_1-2010_11_25.tif:
[testng] 06:06:18,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:06:18,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:06:18,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-26_06-06-18.log]
[testng] 06:06:18,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@146d2cc2 - End of configuration.
[testng] 07:19:02,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:19:02,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:19:02,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-26_07-19-02.log]
[testng] 07:19:02,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bc6400e - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 6625, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 169 minutes 31 seconds
Finished: SUCCESS