Started by upstream project "BIOFORMATS-test-repo" build number 35 originally caused by: Started by upstream project "Trigger" build number 39 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins12779936990668088413.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_4739_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 12:06:34,713 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 12:06:34,715 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 12:06:34,715 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:06:34,717 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:06:34,718 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:06:34,718 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:06:34,718 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:06:34,718 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:06:34,719 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:06:34,719 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:06:34,720 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:06:34,720 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:06:34,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:06:34,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:06:35,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:06:35,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:06:35,029 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:06:35,029 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:06:35,029 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:06:35,030 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:06:35,030 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 12:06:35,031 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 12:06:35,031 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 312 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-15 12:06:35,043] [main] java.version = 1.8.0_342 [testng] 12:06:35,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:06:35,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:06:35,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-15_12-06-35.log] [testng] 12:06:35,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-15 12:06:35,101] [main] testng.directory = /data [testng] [2024-04-15 12:06:35,101] [main] testng.configDirectory = /config [testng] [2024-04-15 12:06:35,118] [main] testng.multiplier = 1.0 [testng] [2024-04-15 12:06:35,118] [main] testng.in-memory = false [testng] [2024-04-15 12:06:35,118] [main] testng.allow-missing = false [testng] [2024-04-15 12:06:35,118] [main] user.language = fr [testng] [2024-04-15 12:06:35,118] [main] user.country = FR [testng] [2024-04-15 12:06:35,119] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-15 12:06:52,891] [main] ---------------------------------------- [testng] [2024-04-15 12:06:52,891] [main] Total files: 283 [testng] [2024-04-15 12:06:52,892] [main] Scan time: 17.772 s (62 ms/file) [testng] [2024-04-15 12:06:52,892] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-15 12:16:21,570] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] 12:16:21,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:16:21,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:21,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-15_12-16-21.log] [testng] 12:16:21,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ee450eb - End of configuration. [testng] [2024-04-15 12:16:21,604] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] 12:16:21,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:16:21,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:21,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-15_12-16-21.log] [testng] 12:16:21,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@406ee174 - End of configuration. [testng] [2024-04-15 12:16:21,785] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] 12:16:21,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:16:21,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:21,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-15_12-16-21.log] [testng] 12:16:21,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71a6c4b4 - End of configuration. [testng] [2024-04-15 12:16:21,878] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif: [testng] 12:16:21,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:16:21,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:21,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-15_12-16-21.log] [testng] 12:16:21,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@574fc01f - End of configuration. [testng] [2024-04-15 12:16:22,061] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] 12:16:22,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:16:22,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:22,062 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-15_12-16-22.log] [testng] 12:16:22,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12356ab2 - End of configuration. [testng] [2024-04-15 12:16:22,197] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] 12:16:22,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:16:22,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:22,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-15_12-16-22.log] [testng] 12:16:22,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c8e50c7 - End of configuration. [testng] [2024-04-15 12:16:22,550] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] 12:16:22,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:16:22,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:22,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-15_12-16-22.log] [testng] 12:16:22,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c3c3b5 - End of configuration. [testng] [2024-04-15 12:16:23,015] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] 12:16:23,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:16:23,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:23,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-15_12-16-23.log] [testng] 12:16:23,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39484032 - End of configuration. [testng] [2024-04-15 12:16:23,317] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] 12:16:23,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:16:23,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:23,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-15_12-16-23.log] [testng] 12:16:23,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e6cfd4e - End of configuration. [testng] [2024-04-15 12:16:24,140] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] 12:16:24,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:16:24,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:24,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-15_12-16-24.log] [testng] 12:16:24,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@763ef30d - End of configuration. [testng] [2024-04-15 12:16:24,211] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] 12:16:24,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:16:24,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:24,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-15_12-16-24.log] [testng] 12:16:24,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5df64058 - End of configuration. [testng] [2024-04-15 12:16:24,289] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir: [testng] 12:16:24,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:16:24,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:16:24,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-15_12-16-24.log] [testng] 12:16:24,291 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8e4f280 - End of configuration. [testng] [2024-04-15 12:16:27,667] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-04-15 12:16:27,775] [pool-1-thread-3] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-04-15 12:16:27,839] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-04-15 12:16:28,317] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-04-15 12:16:28,475] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-04-15 12:16:28,944] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-04-15 12:16:29,694] [pool-1-thread-4] Initializing /data/qa-17270/image1.oir: [testng] [2024-04-15 12:16:29,798] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-04-15 12:16:29,844] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-04-15 12:16:30,315] [pool-1-thread-12] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-04-15 12:16:31,315] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-04-15 12:16:31,360] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-04-15 12:16:32,163] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-04-15 12:16:32,208] [pool-1-thread-8] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-04-15 12:16:32,432] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-04-15 12:16:32,557] [pool-1-thread-10] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-04-15 12:16:32,967] [pool-1-thread-2] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-04-15 12:16:33,027] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-04-15 12:16:33,926] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-04-15 12:16:33,993] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-04-15 12:16:34,129] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-04-15 12:16:36,822] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-04-15 12:16:37,003] [pool-1-thread-7] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-04-15 12:16:37,604] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-04-15 12:16:38,030] [pool-1-thread-10] Initializing /data/qa-17270/stack1.oir: [testng] [2024-04-15 12:16:42,225] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-04-15 12:16:42,552] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-04-15 12:16:43,315] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-04-15 12:16:48,036] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-04-15 12:16:48,243] [pool-1-thread-5] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-04-15 12:16:48,883] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-04-15 12:16:50,196] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-04-15 12:16:59,807] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-04-15 12:17:00,323] [pool-1-thread-3] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-04-15 12:17:00,390] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-04-15 12:17:00,487] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-04-15 12:17:00,597] [pool-1-thread-1] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-04-15 12:17:01,641] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-04-15 12:17:02,020] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-04-15 12:17:02,378] [pool-1-thread-7] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-04-15 12:17:02,765] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-04-15 12:17:03,125] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-04-15 12:17:03,210] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-04-15 12:17:03,281] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-04-15 12:17:13,238] [pool-1-thread-2] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-04-15 12:17:14,034] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-04-15 12:17:16,088] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-04-15 12:17:17,037] [pool-1-thread-7] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-04-15 12:17:19,425] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-04-15 12:17:19,695] [pool-1-thread-5] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-04-15 12:17:20,318] [pool-1-thread-12] Initializing 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[pool-1-thread-1] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-04-15 12:23:13,274] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-04-15 12:23:13,561] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-04-15 12:23:15,265] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-04-15 12:23:24,074] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-04-15 12:23:25,327] [pool-1-thread-11] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-04-15 12:23:27,108] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-04-15 12:23:27,431] [pool-1-thread-1] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-04-15 12:23:28,313] [pool-1-thread-3] Initializing 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12:26:16,936] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-04-15 12:26:17,404] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-04-15 12:26:17,648] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-04-15 12:26:18,472] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-04-15 12:26:19,207] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-04-15 12:26:19,874] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-04-15 12:26:20,522] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-04-15 12:26:22,912] [pool-1-thread-9] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-04-15 12:26:23,156] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-04-15 12:26:24,023] [pool-1-thread-7] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-04-15 12:26:30,281] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-04-15 12:26:30,692] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-04-15 12:26:32,049] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-04-15 12:26:32,509] [pool-1-thread-9] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-04-15 12:26:35,111] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-04-15 12:26:41,202] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-04-15 12:26:42,576] [pool-1-thread-10] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-04-15 12:26:47,979] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-04-15 12:26:48,157] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-04-15 12:26:49,367] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-04-15 12:26:49,918] [pool-1-thread-10] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-04-15 12:26:51,462] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-04-15 12:26:51,618] [pool-1-thread-5] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-04-15 12:26:53,269] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-04-15 12:26:55,989] [pool-1-thread-10] Initializing 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/data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-04-15 12:27:16,138] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-04-15 12:27:16,383] [pool-1-thread-10] Initializing /data/olympus/XYZt.oir: [testng] [2024-04-15 12:27:33,695] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-04-15 12:27:33,885] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-04-15 12:27:34,237] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-04-15 12:27:35,611] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-04-15 12:27:36,158] [pool-1-thread-2] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-04-15 12:27:36,776] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-04-15 12:27:37,674] [pool-1-thread-8] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-04-15 12:27:38,519] [pool-1-thread-7] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-04-15 12:27:42,667] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-04-15 12:27:43,681] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-04-15 12:27:43,908] [pool-1-thread-2] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-04-15 12:27:44,875] [pool-1-thread-9] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-04-15 12:27:45,335] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-04-15 12:27:48,361] [pool-1-thread-2] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-04-15 12:27:49,217] [pool-1-thread-9] Initializing /data/qa-17917/f10010.oir: [testng] [2024-04-15 12:29:32,401] [pool-1-thread-2] Initializing /data/qa-17335/1.oir: [testng] [2024-04-15 12:29:33,165] [pool-1-thread-2] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-04-15 12:29:34,350] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-04-15 12:29:35,513] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-04-15 12:29:36,384] [pool-1-thread-2] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-04-15 12:29:51,184] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] 13:21:01,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 13:21:01,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:21:01,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-15_13-21-01.log] [testng] 13:21:01,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3fa7a7 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 74 minutes 31 seconds Finished: SUCCESS