Started by upstream project "BIOFORMATS-test-repo" build number 300
originally caused by:
Started by upstream project "Trigger" build number 322
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12118395392009951830.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47398_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:22:09,985 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:22:09,987 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:22:09,987 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:09,988 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:22:09,988 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:22:09,988 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:22:09,989 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:22:09,989 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:09,989 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:22:09,989 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:22:09,990 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:22:09,990 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:22:10,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:22:10,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:22:10,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:22:10,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:22:10,249 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:22:10,249 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:22:10,249 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:22:10,249 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:22:10,249 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:22:10,250 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:22:10,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-27 00:22:10,260] [main] java.version = 1.8.0_342
[testng] 00:22:10,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:22:10,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:10,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-27_00-22-10.log]
[testng] 00:22:10,309 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-27 00:22:10,311] [main] testng.directory = /data
[testng] [2024-12-27 00:22:10,312] [main] testng.configDirectory = /config
[testng] [2024-12-27 00:22:10,323] [main] testng.multiplier = 1.0
[testng] [2024-12-27 00:22:10,323] [main] testng.in-memory = false
[testng] [2024-12-27 00:22:10,323] [main] testng.allow-missing = false
[testng] [2024-12-27 00:22:10,324] [main] user.language = en
[testng] [2024-12-27 00:22:10,324] [main] user.country = ${user.country}
[testng] [2024-12-27 00:22:10,324] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-27 00:22:11,225] [main] ----------------------------------------
[testng] [2024-12-27 00:22:11,226] [main] Total files: 36
[testng] [2024-12-27 00:22:11,226] [main] Scan time: 0.901 s (25 ms/file)
[testng] [2024-12-27 00:22:11,226] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 35 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-27 00:22:12,966] [pool-1-thread-1] Initializing /data/generated/mri-stack10.pcx:
[testng] 00:22:12,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:22:12,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:12,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-27_00-22-12.log]
[testng] 00:22:12,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a0b8332 - End of configuration.
[testng] [2024-12-27 00:22:13,015] [pool-1-thread-12] Initializing /data/josh/Screenshots/deltavision.pcx:
[testng] 00:22:13,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:22:13,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:13,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-27_00-22-13.log]
[testng] 00:22:13,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41068bb0 - End of configuration.
[testng] [2024-12-27 00:22:13,032] [pool-1-thread-11] Initializing /data/generated/mri-stack14.pcx:
[testng] 00:22:13,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:22:13,032 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:13,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-27_00-22-13.log]
[testng] 00:22:13,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9673fea - End of configuration.
[testng] [2024-12-27 00:22:13,045] [pool-1-thread-10] Initializing /data/generated/mri-stack26.pcx:
[testng] 00:22:13,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:22:13,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:13,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-27_00-22-13.log]
[testng] 00:22:13,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bb0f086 - End of configuration.
[testng] [2024-12-27 00:22:13,059] [pool-1-thread-9] Initializing /data/generated/mri-stack4.pcx:
[testng] 00:22:13,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:22:13,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:13,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-27_00-22-13.log]
[testng] 00:22:13,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50557eb8 - End of configuration.
[testng] [2024-12-27 00:22:13,069] [pool-1-thread-8] Initializing /data/generated/mri-stack0.pcx:
[testng] 00:22:13,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:22:13,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:13,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-27_00-22-13.log]
[testng] 00:22:13,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41ce101c - End of configuration.
[testng] [2024-12-27 00:22:13,079] [pool-1-thread-7] Initializing /data/josh/Screenshots/leica-lif.pcx:
[testng] 00:22:13,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:22:13,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:13,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-27_00-22-13.log]
[testng] 00:22:13,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d5f59bb - End of configuration.
[testng] [2024-12-27 00:22:13,090] [pool-1-thread-6] Initializing /data/generated/mri-stack25.pcx:
[testng] 00:22:13,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:22:13,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:13,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-27_00-22-13.log]
[testng] 00:22:13,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ed9cef5 - End of configuration.
[testng] [2024-12-27 00:22:13,101] [pool-1-thread-5] Initializing /data/generated/mri-stack12.pcx:
[testng] 00:22:13,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:22:13,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:13,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-27_00-22-13.log]
[testng] 00:22:13,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3db63531 - End of configuration.
[testng] [2024-12-27 00:22:13,111] [pool-1-thread-4] Initializing /data/generated/mri-stack17.pcx:
[testng] 00:22:13,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:22:13,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:13,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-27_00-22-13.log]
[testng] 00:22:13,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19d05034 - End of configuration.
[testng] [2024-12-27 00:22:13,121] [pool-1-thread-3] Initializing /data/generated/mri-stack15.pcx:
[testng] 00:22:13,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:22:13,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:13,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-27_00-22-13.log]
[testng] 00:22:13,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d9d2261 - End of configuration.
[testng] [2024-12-27 00:22:13,130] [pool-1-thread-2] Initializing /data/generated/mri-stack5.pcx:
[testng] 00:22:13,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:22:13,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:22:13,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-27_00-22-13.log]
[testng] 00:22:13,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67cac8cd - End of configuration.
[testng] [2024-12-27 00:22:16,452] [pool-1-thread-2] Initializing /data/generated/mri-stack20.pcx:
[testng] [2024-12-27 00:22:16,460] [pool-1-thread-9] Initializing /data/generated/mri-stack16.pcx:
[testng] [2024-12-27 00:22:16,467] [pool-1-thread-10] Initializing /data/josh/Screenshots/epscolor.pcx:
[testng] [2024-12-27 00:22:16,479] [pool-1-thread-6] Initializing /data/generated/mri-stack13.pcx:
[testng] [2024-12-27 00:22:16,497] [pool-1-thread-3] Initializing /data/josh/Screenshots/fv1000color.pcx:
[testng] [2024-12-27 00:22:16,508] [pool-1-thread-7] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx:
[testng] [2024-12-27 00:22:16,519] [pool-1-thread-12] Initializing /data/generated/mri-stack21.pcx:
[testng] [2024-12-27 00:22:16,527] [pool-1-thread-4] Initializing /data/generated/mri-stack19.pcx:
[testng] [2024-12-27 00:22:16,534] [pool-1-thread-8] Initializing /data/josh/Screenshots/nd2 color.pcx:
[testng] [2024-12-27 00:22:16,547] [pool-1-thread-5] Initializing /data/generated/mri-stack8.pcx:
[testng] [2024-12-27 00:22:16,557] [pool-1-thread-11] Initializing /data/generated/mri-stack7.pcx:
[testng] [2024-12-27 00:22:16,565] [pool-1-thread-1] Initializing /data/generated/mri-stack24.pcx:
[testng] [2024-12-27 00:22:17,665] [pool-1-thread-11] Initializing /data/generated/mri-stack18.pcx:
[testng] [2024-12-27 00:22:17,682] [pool-1-thread-4] Initializing /data/generated/mri-stack22.pcx:
[testng] [2024-12-27 00:22:17,692] [pool-1-thread-5] Initializing /data/generated/mri-stack2.pcx:
[testng] [2024-12-27 00:22:17,734] [pool-1-thread-2] Initializing /data/generated/mri-stack6.pcx:
[testng] [2024-12-27 00:22:17,780] [pool-1-thread-9] Initializing /data/generated/mri-stack23.pcx:
[testng] [2024-12-27 00:22:17,816] [pool-1-thread-1] Initializing /data/generated/mri-stack9.pcx:
[testng] [2024-12-27 00:22:17,845] [pool-1-thread-12] Initializing /data/generated/mri-stack3.pcx:
[testng] [2024-12-27 00:22:17,872] [pool-1-thread-6] Initializing /data/generated/mri-stack11.pcx:
[testng] [2024-12-27 00:22:18,101] [pool-1-thread-10] Initializing /data/generated/mri-stack1.pcx:
[testng] [2024-12-27 00:22:18,355] [pool-1-thread-4] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx:
[testng] [2024-12-27 00:22:18,383] [pool-1-thread-11] Initializing /data/josh/Screenshots/biorad color off.pcx:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1855, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 11 seconds
Finished: SUCCESS