Started by upstream project "BIOFORMATS-test-repo" build number 300 originally caused by: Started by upstream project "Trigger" build number 322 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins793709275944500282.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47436_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:43:30,575 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:43:30,576 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:43:30,576 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:30,577 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:30,578 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:43:30,578 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:43:30,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:43:30,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:30,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:30,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:43:30,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:43:30,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:43:30,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:43:30,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:43:30,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:43:30,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:43:30,842 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:43:30,843 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:43:30,843 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:43:30,843 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:43:30,843 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:43:30,844 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:43:30,844 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 265 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-27 00:43:30,854] [main] java.version = 1.8.0_342 [testng] 00:43:30,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:43:30,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:30,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-27_00-43-30.log] [testng] 00:43:30,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-27 00:43:30,909] [main] testng.directory = /data [testng] [2024-12-27 00:43:30,910] [main] testng.configDirectory = /config [testng] [2024-12-27 00:43:30,922] [main] testng.multiplier = 1.0 [testng] [2024-12-27 00:43:30,923] [main] testng.in-memory = false [testng] [2024-12-27 00:43:30,923] [main] testng.allow-missing = false [testng] [2024-12-27 00:43:30,923] [main] user.language = en [testng] [2024-12-27 00:43:30,923] [main] user.country = ${user.country} [testng] [2024-12-27 00:43:30,923] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-27 00:43:31,469] [main] ---------------------------------------- [testng] [2024-12-27 00:43:31,469] [main] Total files: 21 [testng] [2024-12-27 00:43:31,469] [main] Scan time: 0.546 s (26 ms/file) [testng] [2024-12-27 00:43:31,469] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-27 00:43:41,849] [pool-1-thread-1] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:43:41,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:43:41,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:41,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-27_00-43-41.log] [testng] 00:43:41,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fe481d3 - End of configuration. [testng] [2024-12-27 00:43:42,388] [pool-1-thread-12] Initializing /data/samples/CTC16.TGA: [testng] 00:43:42,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:43:42,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:42,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-27_00-43-42.log] [testng] 00:43:42,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121419fd - End of configuration. [testng] [2024-12-27 00:43:42,934] [pool-1-thread-11] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:43:42,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:43:42,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:42,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-27_00-43-42.log] [testng] 00:43:42,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e97ea82 - End of configuration. [testng] [2024-12-27 00:43:43,456] [pool-1-thread-10] Initializing /data/samples/UTC32.TGA: [testng] 00:43:43,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:43:43,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:43,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-27_00-43-43.log] [testng] 00:43:43,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10857d79 - End of configuration. [testng] [2024-12-27 00:43:44,038] [pool-1-thread-9] Initializing /data/samples/CBW8.TGA: [testng] 00:43:44,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:43:44,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:44,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-27_00-43-44.log] [testng] 00:43:44,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fd3d5e1 - End of configuration. [testng] [2024-12-27 00:43:44,485] [pool-1-thread-8] Initializing /data/samples/FLAG_B16.TGA: [testng] 00:43:44,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:43:44,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:44,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-27_00-43-44.log] [testng] 00:43:44,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6981f452 - End of configuration. [testng] [2024-12-27 00:43:44,857] [pool-1-thread-7] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:43:44,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:43:44,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:44,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-27_00-43-44.log] [testng] 00:43:44,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aeaa94b - End of configuration. [testng] [2024-12-27 00:43:45,172] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] 00:43:45,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:43:45,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:45,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-27_00-43-45.log] [testng] 00:43:45,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34884010 - End of configuration. [testng] [2024-12-27 00:43:45,503] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA: [testng] 00:43:45,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:43:45,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:45,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-27_00-43-45.log] [testng] 00:43:45,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16fd7289 - End of configuration. [testng] [2024-12-27 00:43:45,725] [pool-1-thread-4] Initializing /data/samples/XING_B24.TGA: [testng] 00:43:45,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:43:45,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:45,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-27_00-43-45.log] [testng] 00:43:45,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d2cc31f - End of configuration. [testng] [2024-12-27 00:43:45,999] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: [testng] 00:43:45,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:43:45,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:46,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-27_00-43-46.log] [testng] 00:43:46,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5efa6fcf - End of configuration. [testng] [2024-12-27 00:43:46,175] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] 00:43:46,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:43:46,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:46,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-27_00-43-46.log] [testng] 00:43:46,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a1349ad - End of configuration. [testng] [2024-12-27 00:43:50,280] [pool-1-thread-9] Initializing /data/samples/CCM8.TGA: [testng] [2024-12-27 00:43:50,442] [pool-1-thread-10] Initializing /data/samples/XING_T32.TGA: [testng] [2024-12-27 00:43:50,821] [pool-1-thread-8] Initializing /data/samples/UTC24.TGA: [testng] [2024-12-27 00:43:51,721] [pool-1-thread-7] Initializing /data/samples/UTC16.TGA: [testng] [2024-12-27 00:43:52,063] [pool-1-thread-12] Initializing /data/samples/XING_T16.TGA: [testng] [2024-12-27 00:43:52,336] [pool-1-thread-2] Initializing /data/samples/UBW8.TGA: [testng] [2024-12-27 00:43:52,810] [pool-1-thread-4] Initializing /data/samples/MARBLES.TGA: [testng] [2024-12-27 00:43:53,333] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA: [testng] [2024-12-27 00:43:53,660] [pool-1-thread-5] Initializing /data/samples/FLAG_B24.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 30 seconds Finished: SUCCESS