Started by upstream project "BIOFORMATS-test-repo" build number 300
originally caused by:
Started by upstream project "Trigger" build number 322
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins18344421388976964010.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47441_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:53:18,616 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:53:18,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 00:53:18,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:53:18,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:53:18,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:53:18,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:53:18,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:53:18,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:53:18,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:53:18,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:53:18,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:53:18,621 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:53:18,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:53:18,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:53:18,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:53:18,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:53:18,899 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:53:18,900 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:53:18,900 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:53:18,900 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:53:18,900 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 00:53:18,901 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 00:53:18,901 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-27 00:53:18,911] [main] java.version = 1.8.0_342
[testng] 00:53:18,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:53:18,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:18,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-27_00-53-18.log]
[testng] 00:53:18,971 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-27 00:53:18,973] [main] testng.directory = /data
[testng] [2024-12-27 00:53:18,974] [main] testng.configDirectory = /config
[testng] [2024-12-27 00:53:18,990] [main] testng.multiplier = 1.0
[testng] [2024-12-27 00:53:18,991] [main] testng.in-memory = false
[testng] [2024-12-27 00:53:18,991] [main] testng.allow-missing = false
[testng] [2024-12-27 00:53:18,991] [main] user.language = en
[testng] [2024-12-27 00:53:18,991] [main] user.country = ${user.country}
[testng] [2024-12-27 00:53:18,991] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-27 00:53:21,118] [main] ----------------------------------------
[testng] [2024-12-27 00:53:21,118] [main] Total files: 14
[testng] [2024-12-27 00:53:21,118] [main] Scan time: 2.127 s (151 ms/file)
[testng] [2024-12-27 00:53:21,118] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-27 00:53:40,402] [pool-1-thread-1] Initializing /data/carlsen/Olympics8.tif:
[testng] 00:53:40,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:53:40,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:40,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-27_00-53-40.log]
[testng] 00:53:40,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5560729d - End of configuration.
[testng] [2024-12-27 00:53:41,170] [pool-1-thread-12] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 00:53:41,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:53:41,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:41,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-27_00-53-41.log]
[testng] 00:53:41,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189ab895 - End of configuration.
[testng] [2024-12-27 00:53:44,477] [pool-1-thread-11] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 00:53:44,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:53:44,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:44,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-27_00-53-44.log]
[testng] 00:53:44,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d84482b - End of configuration.
[testng] [2024-12-27 00:53:46,081] [pool-1-thread-10] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 00:53:46,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:53:46,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:46,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-27_00-53-46.log]
[testng] 00:53:46,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@116c9d22 - End of configuration.
[testng] [2024-12-27 00:53:47,247] [pool-1-thread-9] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 00:53:47,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:53:47,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:47,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-27_00-53-47.log]
[testng] 00:53:47,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@753d834f - End of configuration.
[testng] [2024-12-27 00:53:47,705] [pool-1-thread-8] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 00:53:47,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:53:47,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:47,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-27_00-53-47.log]
[testng] 00:53:47,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fb54272 - End of configuration.
[testng] [2024-12-27 00:53:48,079] [pool-1-thread-7] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 00:53:48,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:53:48,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:48,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-27_00-53-48.log]
[testng] 00:53:48,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55587ebb - End of configuration.
[testng] [2024-12-27 00:53:48,500] [pool-1-thread-6] Initializing /data/samples/Classic.tif:
[testng] 00:53:48,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:53:48,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:48,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-27_00-53-48.log]
[testng] 00:53:48,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c0a7e95 - End of configuration.
[testng] [2024-12-27 00:53:48,930] [pool-1-thread-5] Initializing /data/samples/BigTIFFLong.tif:
[testng] 00:53:48,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:53:48,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:48,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-27_00-53-48.log]
[testng] 00:53:48,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a4f4740 - End of configuration.
[testng] [2024-12-27 00:53:49,375] [pool-1-thread-4] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 00:53:49,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:53:49,376 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:49,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-27_00-53-49.log]
[testng] 00:53:49,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@769cef5a - End of configuration.
[testng] [2024-12-27 00:53:49,720] [pool-1-thread-3] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 00:53:49,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:53:49,721 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:49,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-27_00-53-49.log]
[testng] 00:53:49,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40b25c13 - End of configuration.
[testng] [2024-12-27 00:53:50,276] [pool-1-thread-2] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng] 00:53:50,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:53:50,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:53:50,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-27_00-53-50.log]
[testng] 00:53:50,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bac0dd2 - End of configuration.
[testng] [2024-12-27 00:54:01,624] [pool-1-thread-4] Initializing /data/samples/BigTIFF.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 1 second
Finished: SUCCESS