Started by upstream project "BIOFORMATS-test-repo" build number 300
originally caused by:
Started by upstream project "Trigger" build number 322
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins9688451420529696638.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47484_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:07:10,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:07:10,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service.
[testng] 02:07:10,836 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:07:10,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:07:10,838 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:07:10,838 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:07:10,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:07:10,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:07:10,839 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:07:10,840 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:07:10,840 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:07:10,840 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:07:11,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:07:11,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:07:11,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:07:11,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:07:11,089 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:07:11,089 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:07:11,089 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:07:11,089 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:07:11,090 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration.
[testng] 02:07:11,090 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point
[testng] 02:07:11,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 251 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-27 02:07:11,100] [main] java.version = 1.8.0_342
[testng] 02:07:11,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:07:11,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:07:11,146 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-27_02-07-11.log]
[testng] 02:07:11,147 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration.
[testng] [2024-12-27 02:07:11,149] [main] testng.directory = /data
[testng] [2024-12-27 02:07:11,149] [main] testng.configDirectory = /config
[testng] [2024-12-27 02:07:11,160] [main] testng.multiplier = 1.0
[testng] [2024-12-27 02:07:11,161] [main] testng.in-memory = false
[testng] [2024-12-27 02:07:11,161] [main] testng.allow-missing = false
[testng] [2024-12-27 02:07:11,161] [main] user.language = en
[testng] [2024-12-27 02:07:11,161] [main] user.country = ${user.country}
[testng] [2024-12-27 02:07:11,161] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-12-27 02:07:17,511] [main] ----------------------------------------
[testng] [2024-12-27 02:07:17,511] [main] Total files: 40
[testng] [2024-12-27 02:07:17,511] [main] Scan time: 6.35 s (158 ms/file)
[testng] [2024-12-27 02:07:17,511] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 38 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-27 02:08:17,810] [pool-1-thread-1] Initializing /data/kurt/40x_6um.avi:
[testng] 02:08:17,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:08:17,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:17,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-27_02-08-17.log]
[testng] 02:08:17,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d53dd71 - End of configuration.
[testng] [2024-12-27 02:08:18,278] [pool-1-thread-12] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi:
[testng] 02:08:18,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:08:18,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:18,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-27_02-08-18.log]
[testng] 02:08:18,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e6e300 - End of configuration.
[testng] [2024-12-27 02:08:18,839] [pool-1-thread-11] Initializing /data/kurt/63x_6um.avi:
[testng] 02:08:18,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:08:18,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:18,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-27_02-08-18.log]
[testng] 02:08:18,841 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49812d46 - End of configuration.
[testng] [2024-12-27 02:08:19,352] [pool-1-thread-10] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi:
[testng] 02:08:19,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:08:19,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:19,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-27_02-08-19.log]
[testng] 02:08:19,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a8d2915 - End of configuration.
[testng] [2024-12-27 02:08:19,823] [pool-1-thread-9] Initializing /data/roger/op9middle40x.lsm movie 2.avi:
[testng] 02:08:19,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:08:19,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:19,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-27_02-08-19.log]
[testng] 02:08:19,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b42581a - End of configuration.
[testng] [2024-12-27 02:08:20,243] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi:
[testng] 02:08:20,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:08:20,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:20,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-27_02-08-20.log]
[testng] 02:08:20,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@414e1750 - End of configuration.
[testng] [2024-12-27 02:08:20,621] [pool-1-thread-7] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi:
[testng] 02:08:20,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:08:20,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:20,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-27_02-08-20.log]
[testng] 02:08:20,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dcd6f74 - End of configuration.
[testng] [2024-12-27 02:08:20,991] [pool-1-thread-6] Initializing /data/roger/spheroid1-crop.lsm movie.avi:
[testng] 02:08:20,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:08:20,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:20,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-27_02-08-20.log]
[testng] 02:08:20,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cc15a24 - End of configuration.
[testng] [2024-12-27 02:08:21,419] [pool-1-thread-5] Initializing /data/chris/APZ04_009.avi:
[testng] 02:08:21,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:08:21,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:21,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-27_02-08-21.log]
[testng] 02:08:21,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d6e1744 - End of configuration.
[testng] [2024-12-27 02:08:22,639] [pool-1-thread-4] Initializing /data/jae/20xD_5minfor14h.avi:
[testng] 02:08:22,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:08:22,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:22,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-27_02-08-22.log]
[testng] 02:08:22,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dd97a2d - End of configuration.
[testng] [2024-12-27 02:08:23,584] [pool-1-thread-3] Initializing /data/roger/op9middle40x.lsm movie.avi:
[testng] 02:08:23,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:08:23,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:23,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-27_02-08-23.log]
[testng] 02:08:23,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dfa65ee - End of configuration.
[testng] [2024-12-27 02:08:24,013] [pool-1-thread-2] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi:
[testng] 02:08:24,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:08:24,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:24,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-27_02-08-24.log]
[testng] 02:08:24,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@756c7f6e - End of configuration.
[testng] [2024-12-27 02:08:29,417] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie 4.avi:
[testng] [2024-12-27 02:08:29,669] [pool-1-thread-10] Initializing /data/qa-5019/nemo-2_1_.avi:
[testng] [2024-12-27 02:08:30,073] [pool-1-thread-3] Initializing /data/kurt/40x_6um_2.avi:
[testng] [2024-12-27 02:08:30,466] [pool-1-thread-8] Initializing /data/qa-11011/M-flow10001.avi:
[testng] [2024-12-27 02:08:30,915] [pool-1-thread-2] Initializing /data/chip_avi/Level002-DB-090.avi:
[testng] [2024-12-27 02:08:31,282] [pool-1-thread-1] Initializing /data/chip_avi/Level003-DB-089.avi:
[testng] [2024-12-27 02:08:31,665] [pool-1-thread-12] Initializing /data/ascb/TIRF.avi:
[testng] [2024-12-27 02:08:32,286] [pool-1-thread-4] Initializing /data/chip_avi/Level004-WA-116.avi:
[testng] [2024-12-27 02:08:32,673] [pool-1-thread-9] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi:
[testng] [2024-12-27 02:08:34,189] [pool-1-thread-6] Initializing /data/curtis/mri-stack-ij-new.avi:
[testng] [2024-12-27 02:08:34,637] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie 3.avi:
[testng] [2024-12-27 02:08:39,173] [pool-1-thread-2] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi:
[testng] [2024-12-27 02:08:40,005] [pool-1-thread-6] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi:
[testng] [2024-12-27 02:08:40,490] [pool-1-thread-4] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi:
[testng] [2024-12-27 02:08:40,946] [pool-1-thread-1] Initializing /data/simon/24_bit_problem.avi:
[testng] [2024-12-27 02:08:41,334] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi:
[testng] [2024-12-27 02:08:41,685] [pool-1-thread-10] Initializing /data/qa-5019/nemo-2_10_20.avi:
[testng] [2024-12-27 02:08:42,131] [pool-1-thread-5] Initializing /data/curtis/mri-stack-bf.avi:
[testng] [2024-12-27 02:08:42,497] [pool-1-thread-7] Initializing /data/roger/spheroid1.lsm movie.avi:
[testng] [2024-12-27 02:08:42,876] [pool-1-thread-8] Initializing /data/william/worm.avi:
[testng] [2024-12-27 02:08:43,317] [pool-1-thread-12] Initializing /data/sample-avis/extra-chunk/HyperStack.avi:
[testng] [2024-12-27 02:08:43,673] [pool-1-thread-3] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi:
[testng] [2024-12-27 02:08:48,074] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi:
[testng] [2024-12-27 02:08:48,532] [pool-1-thread-8] Initializing /data/prairie/cornea dc and macs.AVI:
[testng] [2024-12-27 02:08:48,978] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-old.avi:
[testng] [2024-12-27 02:08:49,370] [pool-1-thread-10] Initializing /data/qa-7450/MVI_3610.AVI:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 2014, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 47 seconds
Finished: SUCCESS