Started by upstream project "BIOFORMATS-test-repo" build number 300 originally caused by: Started by upstream project "Trigger" build number 322 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins6749748379168982290.sh + '[' psd = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47531_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 05:01:01,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:01:01,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:01:01,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:01:01,269 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:01:01,277 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:01:01,278 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:01:01,278 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:01:01,278 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:01:01,278 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 05:01:01,279 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 05:01:01,279 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 562 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-27 05:01:01,289] [main] java.version = 1.8.0_342 [testng] 05:01:01,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:01:01,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:01,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-27_05-01-01.log] [testng] 05:01:01,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-12-27 05:01:01,342] [main] testng.directory = /data [testng] [2024-12-27 05:01:01,342] [main] testng.configDirectory = /config [testng] [2024-12-27 05:01:01,360] [main] testng.multiplier = 1.0 [testng] [2024-12-27 05:01:01,360] [main] testng.in-memory = false [testng] [2024-12-27 05:01:01,360] [main] testng.allow-missing = false [testng] [2024-12-27 05:01:01,360] [main] user.language = en [testng] [2024-12-27 05:01:01,360] [main] user.country = ${user.country} [testng] [2024-12-27 05:01:01,360] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-12-27 05:01:02,221] [main] ---------------------------------------- [testng] [2024-12-27 05:01:02,221] [main] Total files: 18 [testng] [2024-12-27 05:01:02,221] [main] Scan time: 0.86 s (47 ms/file) [testng] [2024-12-27 05:01:02,221] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-27 05:01:18,699] [pool-1-thread-1] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 05:01:18,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:01:18,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:18,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-27_05-01-18.log] [testng] 05:01:18,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bd20bd6 - End of configuration. [testng] [2024-12-27 05:01:19,491] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd: [testng] 05:01:19,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:01:19,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:19,492 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-27_05-01-19.log] [testng] 05:01:19,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fcd748f - End of configuration. [testng] [2024-12-27 05:01:20,260] [pool-1-thread-11] Initializing /data/misc/venus_composite_8bit.psd: [testng] 05:01:20,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:01:20,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:20,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-27_05-01-20.log] [testng] 05:01:20,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50787e0d - End of configuration. [testng] [2024-12-27 05:01:21,022] [pool-1-thread-10] Initializing /data/misc/smilie.psd: [testng] 05:01:21,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:01:21,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:21,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-27_05-01-21.log] [testng] 05:01:21,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dd76a7c - End of configuration. [testng] [2024-12-27 05:01:21,896] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 05:01:21,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:01:21,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:21,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-27_05-01-21.log] [testng] 05:01:21,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a4ce1a - End of configuration. [testng] [2024-12-27 05:01:22,598] [pool-1-thread-8] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 05:01:22,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:01:22,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:22,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-27_05-01-22.log] [testng] 05:01:22,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7363c82b - End of configuration. [testng] [2024-12-27 05:01:24,322] [pool-1-thread-7] Initializing /data/ascb/607x.psd: [testng] 05:01:24,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:01:24,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:24,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-27_05-01-24.log] [testng] 05:01:24,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4973cca5 - End of configuration. [testng] [2024-12-27 05:01:25,080] [pool-1-thread-6] Initializing /data/cris/house.tif: [testng] 05:01:25,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:01:25,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:25,081 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-27_05-01-25.log] [testng] 05:01:25,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e0b016 - End of configuration. [testng] [2024-12-27 05:01:27,666] [pool-1-thread-5] Initializing /data/ascb/423.psd: [testng] 05:01:27,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:01:27,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:27,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-27_05-01-27.log] [testng] 05:01:27,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e023322 - End of configuration. [testng] [2024-12-27 05:01:28,392] [pool-1-thread-4] Initializing /data/simon/colour_separated_image.psd: [testng] 05:01:28,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:01:28,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:28,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-27_05-01-28.log] [testng] 05:01:28,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36c5c2c2 - End of configuration. [testng] [2024-12-27 05:01:29,174] [pool-1-thread-3] Initializing /data/misc/glossy_buttons.psd: [testng] 05:01:29,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:01:29,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:29,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-27_05-01-29.log] [testng] 05:01:29,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@383bf4c6 - End of configuration. [testng] [2024-12-27 05:01:29,888] [pool-1-thread-2] Initializing /data/misc/glossy_orbs.psd: [testng] 05:01:29,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:01:29,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:29,889 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-27_05-01-29.log] [testng] 05:01:29,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33f8697d - End of configuration. [testng] [2024-12-27 05:01:43,850] [pool-1-thread-2] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [2024-12-27 05:01:44,581] [pool-1-thread-4] Initializing /data/big-images/8kx8k.psd: [testng] [2024-12-27 05:01:45,336] [pool-1-thread-9] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] [2024-12-27 05:01:46,098] [pool-1-thread-10] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] [2024-12-27 05:01:46,849] [pool-1-thread-3] Initializing /data/misc/venus_composite.psd: [testng] [2024-12-27 05:01:47,622] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 11 seconds Finished: SUCCESS