Started by upstream project "BIOFORMATS-test-repo" build number 301
originally caused by:
Started by upstream project "Trigger" build number 323
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins8600859695003710048.sh
+ '[' visitech = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47580_merge_ci -v /uod/idr/repos/curated/visitech:/data -v /uod/idr-scratch/merge-ci/curated/visitech:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 00:44:45,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:44:45,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:44:45,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:44:45,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:44:45,486 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:44:45,487 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:44:45,487 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:44:45,487 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:44:45,487 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6340e5f0 - End of configuration.
[testng] 00:44:45,488 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1c7696c6 - Registering current configuration as safe fallback point
[testng] 00:44:45,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60099951 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 383 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-28 00:44:45,497] [main] java.version = 11.0.16
[testng] 00:44:45,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:44:45,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:44:45,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-28_00-44-45.log]
[testng] 00:44:45,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
[testng] [2024-12-28 00:44:45,547] [main] testng.directory = /data
[testng] [2024-12-28 00:44:45,547] [main] testng.configDirectory = /config
[testng] [2024-12-28 00:44:45,557] [main] testng.multiplier = 1.0
[testng] [2024-12-28 00:44:45,558] [main] testng.in-memory = false
[testng] [2024-12-28 00:44:45,558] [main] testng.allow-missing = false
[testng] [2024-12-28 00:44:45,558] [main] user.language = en
[testng] [2024-12-28 00:44:45,558] [main] user.country = ${user.country}
[testng] [2024-12-28 00:44:45,559] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-28 00:45:26,245] [main] ----------------------------------------
[testng] [2024-12-28 00:45:26,245] [main] Total files: 45
[testng] [2024-12-28 00:45:26,246] [main] Scan time: 40.686 s (904 ms/file)
[testng] [2024-12-28 00:45:26,246] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-28 00:46:13,864] [pool-1-thread-1] Initializing /data/kazem/noname Report.html:
[testng] 00:46:13,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:46:13,865 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:13,866 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-28_00-46-13.log]
[testng] 00:46:13,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@501541ea - End of configuration.
[testng] [2024-12-28 00:46:14,694] [pool-1-thread-12] Initializing /data/scott/2 channel z 6 xy stage positions/2 chanel z 3x2 GRID Report.html:
[testng] 00:46:14,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:46:14,695 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:14,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-28_00-46-14.log]
[testng] 00:46:14,696 |-INFO in ch.qos.logback.core.sift.SiftProcessor@757c74b8 - End of configuration.
[testng] [2024-12-28 00:46:16,104] [pool-1-thread-11] Initializing /data/brian/ScreenShot.jpg:
[testng] 00:46:16,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:46:16,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:16,105 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-28_00-46-16.log]
[testng] 00:46:16,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@394b5868 - End of configuration.
[testng] [2024-12-28 00:46:16,315] [pool-1-thread-10] Initializing /data/brian/070613reA1_2 Report.html:
[testng] 00:46:16,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:46:16,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:16,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-28_00-46-16.log]
[testng] 00:46:16,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ad4f8d6 - End of configuration.
[testng] [2024-12-28 00:46:17,400] [pool-1-thread-9] Initializing /data/scott/2 Channel Z timelaps repeat/2 channel_Z_timelaps 2 Report.html:
[testng] 00:46:17,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:46:17,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:17,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-28_00-46-17.log]
[testng] 00:46:17,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ea83688 - End of configuration.
[testng] [2024-12-28 00:46:18,233] [pool-1-thread-8] Initializing /data/oliver/20x/491 Report.html:
[testng] 00:46:18,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:46:18,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:18,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-28_00-46-18.log]
[testng] 00:46:18,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e112d15 - End of configuration.
[testng] [2024-12-28 00:46:19,470] [pool-1-thread-7] Initializing /data/scott/2 channel_Z_timelaps/2 channel_Z_timelaps Report.html:
[testng] 00:46:19,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:46:19,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:19,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-28_00-46-19.log]
[testng] 00:46:19,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@485664a9 - End of configuration.
[testng] [2024-12-28 00:46:19,938] [pool-1-thread-6] Initializing /data/scott/2 channel_Z_timelaps/525.tif:
[testng] 00:46:19,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:46:19,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:19,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-28_00-46-19.log]
[testng] 00:46:19,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e735d5 - End of configuration.
[testng] [2024-12-28 00:46:21,680] [pool-1-thread-5] Initializing /data/brian/060916-01-561.tif:
[testng] 00:46:21,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:46:21,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:21,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-28_00-46-21.log]
[testng] 00:46:21,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dc1e753 - End of configuration.
[testng] [2024-12-28 00:46:23,982] [pool-1-thread-4] Initializing /data/brian/060916-01 Report.html:
[testng] 00:46:23,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:46:23,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:23,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-28_00-46-23.log]
[testng] 00:46:23,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@512af8 - End of configuration.
[testng] [2024-12-28 00:46:24,441] [pool-1-thread-3] Initializing /data/oliver/20x/488 Report.html:
[testng] 00:46:24,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:46:24,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:24,442 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-28_00-46-24.log]
[testng] 00:46:24,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f6cd01d - End of configuration.
[testng] [2024-12-28 00:46:25,688] [pool-1-thread-2] Initializing /data/brian/060916-01-488.tif:
[testng] 00:46:25,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:46:25,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:46:25,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-28_00-46-25.log]
[testng] 00:46:25,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5053d326 - End of configuration.
[testng] [2024-12-28 00:46:38,091] [pool-1-thread-11] Initializing /data/scott/2 Channel z no timelaps/2 chanel z no time Report.html:
[testng] [2024-12-28 00:46:47,267] [pool-1-thread-6] Initializing /data/scott/2 Channel z timelaps original/2 channel_Z_timelaps Report.html:
[testng] [2024-12-28 00:46:48,170] [pool-1-thread-10] Initializing /data/scott/2 channel_Z_timelaps/597.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 3 minutes 32 seconds
Finished: SUCCESS