Started by upstream project "BIOFORMATS-test-repo" build number 302
originally caused by:
Started by upstream project "Trigger" build number 324
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins14234327623704993617.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47771_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:54:45,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:54:45,076 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:54:45,076 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:54:45,077 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:54:45,078 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:54:45,078 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:54:45,078 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:54:45,078 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:54:45,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:54:45,079 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:54:45,079 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:54:45,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:54:45,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:54:45,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:54:45,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:54:45,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:54:45,265 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:54:45,265 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:54:45,265 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:54:45,266 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:54:45,266 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:54:45,267 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:54:45,267 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-29 00:54:45,275] [main] java.version = 17.0.2
[testng] 00:54:45,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:54:45,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:54:45,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-29_00-54-45.log]
[testng] 00:54:45,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-29 00:54:45,322] [main] testng.directory = /data
[testng] [2024-12-29 00:54:45,322] [main] testng.configDirectory = /config
[testng] [2024-12-29 00:54:45,330] [main] testng.multiplier = 1.0
[testng] [2024-12-29 00:54:45,331] [main] testng.in-memory = false
[testng] [2024-12-29 00:54:45,331] [main] testng.allow-missing = false
[testng] [2024-12-29 00:54:45,331] [main] user.language = en
[testng] [2024-12-29 00:54:45,331] [main] user.country = ${user.country}
[testng] [2024-12-29 00:54:45,331] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-29 00:54:47,241] [main] ----------------------------------------
[testng] [2024-12-29 00:54:47,241] [main] Total files: 14
[testng] [2024-12-29 00:54:47,241] [main] Scan time: 1.909 s (136 ms/file)
[testng] [2024-12-29 00:54:47,241] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-29 00:55:19,984] [pool-1-thread-1] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 00:55:19,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:55:19,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:19,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-29_00-55-19.log]
[testng] 00:55:19,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f124852 - End of configuration.
[testng] [2024-12-29 00:55:21,237] [pool-1-thread-12] Initializing /data/carlsen/Olympics8.tif:
[testng] 00:55:21,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:55:21,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:21,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-29_00-55-21.log]
[testng] 00:55:21,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ac0135f - End of configuration.
[testng] [2024-12-29 00:55:22,066] [pool-1-thread-11] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 00:55:22,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:55:22,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:22,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-29_00-55-22.log]
[testng] 00:55:22,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65792977 - End of configuration.
[testng] [2024-12-29 00:55:22,871] [pool-1-thread-10] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 00:55:22,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:55:22,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:22,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-29_00-55-22.log]
[testng] 00:55:22,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6599a867 - End of configuration.
[testng] [2024-12-29 00:55:24,520] [pool-1-thread-9] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng] 00:55:24,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:55:24,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:24,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-29_00-55-24.log]
[testng] 00:55:24,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@158ecf1a - End of configuration.
[testng] [2024-12-29 00:55:27,942] [pool-1-thread-8] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 00:55:27,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:55:27,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:27,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-29_00-55-27.log]
[testng] 00:55:27,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@720a7a07 - End of configuration.
[testng] [2024-12-29 00:55:31,259] [pool-1-thread-7] Initializing /data/samples/BigTIFF.tif:
[testng] 00:55:31,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:55:31,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:31,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-29_00-55-31.log]
[testng] 00:55:31,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b03d555 - End of configuration.
[testng] [2024-12-29 00:55:32,146] [pool-1-thread-6] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 00:55:32,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:55:32,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:32,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-29_00-55-32.log]
[testng] 00:55:32,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5687976e - End of configuration.
[testng] [2024-12-29 00:55:33,083] [pool-1-thread-5] Initializing /data/samples/Classic.tif:
[testng] 00:55:33,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:55:33,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:33,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-29_00-55-33.log]
[testng] 00:55:33,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dc9ed8b - End of configuration.
[testng] [2024-12-29 00:55:34,109] [pool-1-thread-4] Initializing /data/carlsen/Olympics8-raw.tif:
[testng] 00:55:34,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:55:34,110 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:34,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-29_00-55-34.log]
[testng] 00:55:34,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5605a669 - End of configuration.
[testng] [2024-12-29 00:55:36,021] [pool-1-thread-3] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 00:55:36,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:55:36,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:36,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-29_00-55-36.log]
[testng] 00:55:36,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6730cdf6 - End of configuration.
[testng] [2024-12-29 00:55:37,794] [pool-1-thread-2] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 00:55:37,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:55:37,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:55:37,795 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-29_00-55-37.log]
[testng] 00:55:37,795 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e7cbbef - End of configuration.
[testng] [2024-12-29 00:55:50,664] [pool-1-thread-3] Initializing /data/samples/BigTIFFLong.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 24 seconds
Finished: SUCCESS