Started by upstream project "BIOFORMATS-test-repo" build number 302
originally caused by:
Started by upstream project "Trigger" build number 324
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins10734283618378043515.sh
+ '[' canon = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47772_merge_ci -v /uod/idr/repos/curated/canon:/data -v /uod/idr-scratch/merge-ci/curated/canon:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:56:08,115 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:56:08,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 00:56:08,117 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:56:08,118 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:56:08,118 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:56:08,118 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:56:08,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:56:08,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:56:08,119 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:56:08,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:56:08,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:56:08,120 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:56:08,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:56:08,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:56:08,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:56:08,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:56:08,318 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:56:08,318 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:56:08,318 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:56:08,318 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:56:08,318 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 00:56:08,319 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 00:56:08,319 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-29 00:56:08,328] [main] java.version = 17.0.2
[testng] 00:56:08,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:56:08,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:08,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-29_00-56-08.log]
[testng] 00:56:08,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-29 00:56:08,375] [main] testng.directory = /data
[testng] [2024-12-29 00:56:08,376] [main] testng.configDirectory = /config
[testng] [2024-12-29 00:56:08,384] [main] testng.multiplier = 1.0
[testng] [2024-12-29 00:56:08,385] [main] testng.in-memory = false
[testng] [2024-12-29 00:56:08,385] [main] testng.allow-missing = false
[testng] [2024-12-29 00:56:08,385] [main] user.language = en
[testng] [2024-12-29 00:56:08,386] [main] user.country = ${user.country}
[testng] [2024-12-29 00:56:08,386] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-29 00:56:19,820] [main] ----------------------------------------
[testng] [2024-12-29 00:56:19,820] [main] Total files: 13
[testng] [2024-12-29 00:56:19,820] [main] Scan time: 11.434 s (879 ms/file)
[testng] [2024-12-29 00:56:19,820] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-29 00:56:32,979] [pool-1-thread-1] Initializing /data/pete/Raw-CR2.CR2:
[testng] 00:56:32,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:56:32,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:32,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-29_00-56-32.log]
[testng] 00:56:32,981 |-INFO in ch.qos.logback.core.sift.SiftProcessor@512ad381 - End of configuration.
[testng] [2024-12-29 00:56:34,680] [pool-1-thread-12] Initializing /data/pete/DNG-THM.THM:
[testng] 00:56:34,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:56:34,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:34,681 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-29_00-56-34.log]
[testng] 00:56:34,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61335ed5 - End of configuration.
[testng] [2024-12-29 00:56:35,422] [pool-1-thread-11] Initializing /data/pete/Learning to Fly.JPG:
[testng] 00:56:35,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:56:35,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:35,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-29_00-56-35.log]
[testng] 00:56:35,423 |-INFO in ch.qos.logback.core.sift.SiftProcessor@428ef514 - End of configuration.
[testng] [2024-12-29 00:56:35,861] [pool-1-thread-10] Initializing /data/pete/DNG-JPG.JPG:
[testng] 00:56:35,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:56:35,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:35,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-29_00-56-35.log]
[testng] 00:56:35,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b57678c - End of configuration.
[testng] [2024-12-29 00:56:36,599] [pool-1-thread-9] Initializing /data/pete/DNG-CRW.CRW:
[testng] 00:56:36,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:56:36,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:36,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-29_00-56-36.log]
[testng] 00:56:36,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3fe94f - End of configuration.
[testng] [2024-12-29 00:56:37,784] [pool-1-thread-8] Initializing /data/cls/_N5Y0001.CR2:
[testng] 00:56:37,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:56:37,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:37,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-29_00-56-37.log]
[testng] 00:56:37,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fcbcf6f - End of configuration.
[testng] [2024-12-29 00:56:39,039] [pool-1-thread-7] Initializing /data/pete/Raw-THM.THM:
[testng] 00:56:39,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:56:39,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:39,040 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-29_00-56-39.log]
[testng] 00:56:39,041 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2de08541 - End of configuration.
[testng] [2024-12-29 00:56:40,430] [pool-1-thread-6] Initializing /data/kinor/2013_03_08_0808.CR2:
[testng] 00:56:40,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:56:40,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:40,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-29_00-56-40.log]
[testng] 00:56:40,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bb6d9c4 - End of configuration.
[testng] [2024-12-29 00:56:41,340] [pool-1-thread-5] Initializing /data/pete/DNG-CR2.CR2:
[testng] 00:56:41,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:56:41,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:41,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-29_00-56-41.log]
[testng] 00:56:41,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58c9485 - End of configuration.
[testng] [2024-12-29 00:56:42,710] [pool-1-thread-4] Initializing /data/pete/Raw-WAV.WAV:
[testng] 00:56:42,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:56:42,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:42,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-29_00-56-42.log]
[testng] 00:56:42,712 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6df8d200 - End of configuration.
[testng] [2024-12-29 00:56:44,186] [pool-1-thread-3] Initializing /data/pete/DNG-WAV.WAV:
[testng] 00:56:44,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:56:44,186 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:44,187 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-29_00-56-44.log]
[testng] 00:56:44,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34ad6f31 - End of configuration.
[testng] [2024-12-29 00:56:45,025] [pool-1-thread-2] Initializing /data/pete/Raw-JPG.JPG:
[testng] 00:56:45,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:56:45,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:56:45,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-29_00-56-45.log]
[testng] 00:56:45,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f8495e8 - End of configuration.
[testng] [2024-12-29 00:56:57,571] [pool-1-thread-11] Initializing /data/pete/Raw-CRW.CRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 6 seconds
Finished: SUCCESS