Started by upstream project "BIOFORMATS-test-repo" build number 302
originally caused by:
Started by upstream project "Trigger" build number 324
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins1034038328509397527.sh
+ '[' ariol = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47780_merge_ci -v /uod/idr/repos/curated/ariol:/data -v /uod/idr-scratch/merge-ci/curated/ariol:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:07:31,692 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:07:31,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
[testng] 01:07:31,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:07:31,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:07:31,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:07:31,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:07:31,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:07:31,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:07:31,696 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:07:31,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:07:31,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:07:31,697 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:07:31,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:07:31,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:07:31,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:07:31,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:07:31,937 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:07:31,937 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:07:31,937 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:07:31,938 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:07:31,938 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
[testng] 01:07:31,939 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
[testng] 01:07:31,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 243 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-12-29 01:07:31,948] [main] java.version = 17.0.2
[testng] 01:07:31,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:07:31,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:07:32,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-29_01-07-31.log]
[testng] 01:07:32,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
[testng] [2024-12-29 01:07:32,020] [main] testng.directory = /data
[testng] [2024-12-29 01:07:32,021] [main] testng.configDirectory = /config
[testng] [2024-12-29 01:07:32,030] [main] testng.multiplier = 1.0
[testng] [2024-12-29 01:07:32,031] [main] testng.in-memory = false
[testng] [2024-12-29 01:07:32,031] [main] testng.allow-missing = false
[testng] [2024-12-29 01:07:32,032] [main] user.language = en
[testng] [2024-12-29 01:07:32,032] [main] user.country = ${user.country}
[testng] [2024-12-29 01:07:32,032] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-12-29 01:07:48,595] [main] ----------------------------------------
[testng] [2024-12-29 01:07:48,595] [main] Total files: 33
[testng] [2024-12-29 01:07:48,595] [main] Scan time: 16.563 s (501 ms/file)
[testng] [2024-12-29 01:07:48,595] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 26 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-12-29 01:08:09,097] [pool-1-thread-1] Initializing /data/karen/CBC73B29-94B4-44E8-BFCD-FC7CE4CF8109.jpg:
[testng] 01:08:09,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:08:09,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:09,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-29_01-08-09.log]
[testng] 01:08:09,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4929d79 - End of configuration.
[testng] [2024-12-29 01:08:09,425] [pool-1-thread-12] Initializing /data/karen/FD96C1D1-ABE6-4478-A673-652AA63435F2.jpg:
[testng] 01:08:09,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:08:09,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:09,426 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-29_01-08-09.log]
[testng] 01:08:09,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6595e7d9 - End of configuration.
[testng] [2024-12-29 01:08:09,913] [pool-1-thread-11] Initializing /data/karen/C6492D1B-CEB2-4CBB-B4E8-88B8828E763D.jpg:
[testng] 01:08:09,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:08:09,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:09,914 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-29_01-08-09.log]
[testng] 01:08:09,915 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49a1bbcd - End of configuration.
[testng] [2024-12-29 01:08:10,410] [pool-1-thread-10] Initializing /data/karen/AEC8E959-A1A7-4FCA-A755-F3D9DA44C118.jpg:
[testng] 01:08:10,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:08:10,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:10,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-29_01-08-10.log]
[testng] 01:08:10,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@febb48f - End of configuration.
[testng] [2024-12-29 01:08:10,700] [pool-1-thread-9] Initializing /data/karen/E8E773C3-C86B-4457-9D2E-2DFB91EF1714.jpg:
[testng] 01:08:10,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:08:10,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:10,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-29_01-08-10.log]
[testng] 01:08:10,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@428e50b0 - End of configuration.
[testng] [2024-12-29 01:08:10,994] [pool-1-thread-8] Initializing /data/karen/9C2E458B-73C5-4D03-84F7-060F83B4D95A.jpg:
[testng] 01:08:10,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:08:10,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:10,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-29_01-08-10.log]
[testng] 01:08:10,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@735985c4 - End of configuration.
[testng] [2024-12-29 01:08:11,328] [pool-1-thread-7] Initializing /data/karen/6F44F067-6003-458E-871B-1F9AE1F7C928.jpg:
[testng] 01:08:11,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:08:11,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:11,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-29_01-08-11.log]
[testng] 01:08:11,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61b100a7 - End of configuration.
[testng] [2024-12-29 01:08:11,622] [pool-1-thread-6] Initializing /data/karen/BB1976B8-C06C-4CFC-8C94-7AEF45E3E191.jpg:
[testng] 01:08:11,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:08:11,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:11,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-29_01-08-11.log]
[testng] 01:08:11,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46489b8 - End of configuration.
[testng] [2024-12-29 01:08:11,936] [pool-1-thread-5] Initializing /data/karen/6F685C73-2CD1-421E-B85B-FC1FA4F3F155.jpg:
[testng] 01:08:11,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:08:11,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:11,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-29_01-08-11.log]
[testng] 01:08:11,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d1dd739 - End of configuration.
[testng] [2024-12-29 01:08:12,250] [pool-1-thread-4] Initializing /data/karen/26D1C9F6-07D0-4D5F-BD3F-1B7ECB1CB011.jpg:
[testng] 01:08:12,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:08:12,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:12,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-29_01-08-12.log]
[testng] 01:08:12,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d8d404b - End of configuration.
[testng] [2024-12-29 01:08:12,534] [pool-1-thread-3] Initializing /data/karen/76336D87-715F-4F65-B069-3D3C548625D5.jpg:
[testng] 01:08:12,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:08:12,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:12,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-29_01-08-12.log]
[testng] 01:08:12,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@318afe35 - End of configuration.
[testng] [2024-12-29 01:08:12,815] [pool-1-thread-2] Initializing /data/karen/FFB1E060-F4A7-431B-AB93-655CE861D238.jpg:
[testng] 01:08:12,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:08:12,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:08:12,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-29_01-08-12.log]
[testng] 01:08:12,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f2fcc1c - End of configuration.
[testng] [2024-12-29 01:08:21,926] [pool-1-thread-6] Initializing /data/karen/885FB907-C91D-4E8E-87AB-611D8A61402C.jpg:
[testng] [2024-12-29 01:08:22,167] [pool-1-thread-7] Initializing /data/karen/FE241E3F-2DA8-4BA9-99CB-635663EDE04F.jpg:
[testng] [2024-12-29 01:08:22,419] [pool-1-thread-3] Initializing /data/karen/94227E77-1CEA-4531-BAD7-1B9152596BC1.jpg:
[testng] [2024-12-29 01:08:22,739] [pool-1-thread-9] Initializing /data/karen/425C6157-4CFF-434F-8CDC-5D10CE65F168.jpg:
[testng] [2024-12-29 01:08:22,984] [pool-1-thread-2] Initializing /data/karen/C8026BD0-CBB2-4C73-B69F-9E505B47D46D.jpg:
[testng] [2024-12-29 01:08:23,207] [pool-1-thread-10] Initializing /data/karen/07AEF934-D3B2-4558-AB51-4BD744DF2DFF.jpg:
[testng] [2024-12-29 01:08:23,429] [pool-1-thread-12] Initializing /data/karen/0017007C-2559-4778-962F-8C4951E89A35.jpg:
[testng] [2024-12-29 01:08:23,661] [pool-1-thread-5] Initializing /data/karen/DFCC500D-A2DA-4166-909B-87EA112049A3.jpg:
[testng] [2024-12-29 01:08:23,903] [pool-1-thread-11] Initializing /data/karen/04CBE9A7-FA1B-4556-9900-6D869E85FFC7.jpg:
[testng] [2024-12-29 01:08:24,329] [pool-1-thread-4] Initializing /data/karen/612E1340-B118-425D-9B59-FD7860AA2B8F.jpg:
[testng] [2024-12-29 01:08:25,189] [pool-1-thread-1] Initializing /data/karen/3AF38F06-D489-4DDA-9806-14A3E12FCE7B.jpg:
[testng] [2024-12-29 01:08:25,511] [pool-1-thread-8] Initializing /data/karen/025B2189-8F22-49E7-A23A-93FAC9BABE18.jpg:
[testng] [2024-12-29 01:08:31,932] [pool-1-thread-2] Initializing /data/karen/6FC2A99A-C50C-4DD0-B379-FA5595AFD2D6.jpg:
[testng] [2024-12-29 01:08:32,214] [pool-1-thread-6] Initializing /data/karen/E1445030-57F3-4E15-8BF5-763E0F691B0C.jpg:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1378, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 11 seconds
Finished: SUCCESS