Started by upstream project "BIOFORMATS-test-repo" build number 302
originally caused by:
 Started by upstream project "Trigger" build number 324
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins1140761442607407911.sh
+ '[' tillvision = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_47802_merge_ci -v /uod/idr/repos/curated/tillvision:/data -v /uod/idr-scratch/merge-ci/curated/tillvision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 02:05:41,409 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:05:41,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 02:05:41,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:05:41,411 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:05:41,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:05:41,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:05:41,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:05:41,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:05:41,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:05:41,413 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:05:41,414 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:05:41,414 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:05:41,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:05:41,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:05:41,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:05:41,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:05:41,610 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:05:41,610 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:05:41,610 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:05:41,611 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:05:41,611 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 02:05:41,612 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 02:05:41,612 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-12-29 02:05:41,621] [main] java.version = 17.0.2
   [testng] 02:05:41,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:05:41,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:41,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-29_02-05-41.log]
   [testng] 02:05:41,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-12-29 02:05:41,668] [main] testng.directory = /data
   [testng] [2024-12-29 02:05:41,668] [main] testng.configDirectory = /config
   [testng] [2024-12-29 02:05:41,678] [main] testng.multiplier = 1.0
   [testng] [2024-12-29 02:05:41,679] [main] testng.in-memory = false
   [testng] [2024-12-29 02:05:41,679] [main] testng.allow-missing = false
   [testng] [2024-12-29 02:05:41,679] [main] user.language = en
   [testng] [2024-12-29 02:05:41,679] [main] user.country = ${user.country}
   [testng] [2024-12-29 02:05:41,679] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-12-29 02:06:10,561] [main] ----------------------------------------
   [testng] [2024-12-29 02:06:10,561] [main] Total files: 46
   [testng] [2024-12-29 02:06:10,561] [main] Scan time: 28.882 s (627 ms/file)
   [testng] [2024-12-29 02:06:10,561] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 25 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-12-29 02:07:54,251] [pool-1-thread-1] Initializing /data/venu/060310/1_ drug addition actual test_ glass_Wrkspc6.vws: 
   [testng] 02:07:54,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:07:54,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:07:54,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-29_02-07-54.log]
   [testng] 02:07:54,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68d7184 - End of configuration.
   [testng] [2024-12-29 02:07:55,874] [pool-1-thread-12] Initializing /data/venu/060310/drug addition _BAM.vws: 
   [testng] 02:07:55,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:07:55,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:07:55,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-29_02-07-55.log]
   [testng] 02:07:55,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ece9a1e - End of configuration.
   [testng] [2024-12-29 02:07:57,261] [pool-1-thread-11] Initializing /data/stephan/two sequences.vws: 
   [testng] 02:07:57,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:07:57,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:07:57,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-29_02-07-57.log]
   [testng] 02:07:57,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2408ca60 - End of configuration.
   [testng] [2024-12-29 02:07:59,863] [pool-1-thread-10] Initializing /data/andreas/090811E1.vws: 
   [testng] 02:07:59,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:07:59,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:07:59,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-29_02-07-59.log]
   [testng] 02:07:59,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41d2ea91 - End of configuration.
   [testng] [2024-12-29 02:08:11,866] [pool-1-thread-9] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated BAM_Wrkspc1.vws: 
   [testng] 02:08:11,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:08:11,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:08:11,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-29_02-08-11.log]
   [testng] 02:08:11,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@506be020 - End of configuration.
   [testng] [2024-12-29 02:08:13,382] [pool-1-thread-8] Initializing /data/ian/working_tillvision_vws/20120322.vws: 
   [testng] 02:08:13,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:08:13,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:08:13,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-29_02-08-13.log]
   [testng] 02:08:13,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34cafbb9 - End of configuration.
   [testng] [2024-12-29 02:08:18,751] [pool-1-thread-7] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc1.vws: 
   [testng] 02:08:18,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:08:18,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:08:18,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-29_02-08-18.log]
   [testng] 02:08:18,752 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57da4f68 - End of configuration.
   [testng] [2024-12-29 02:08:20,970] [pool-1-thread-6] Initializing /data/gerhard/test.vws: 
   [testng] 02:08:20,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:08:20,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:08:20,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-29_02-08-20.log]
   [testng] 02:08:20,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49bdaa01 - End of configuration.
   [testng] [2024-12-29 02:08:22,434] [pool-1-thread-5] Initializing /data/venu/060310/1_glass bottom dish_fluorescence snapshot.tif: 
   [testng] 02:08:22,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:08:22,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:08:22,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-29_02-08-22.log]
   [testng] 02:08:22,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@705f4ee - End of configuration.
   [testng] [2024-12-29 02:08:28,718] [pool-1-thread-4] Initializing /data/imagesc-84715/working.vws: 
   [testng] 02:08:28,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:08:28,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:08:28,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-29_02-08-28.log]
   [testng] 02:08:28,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a1377d0 - End of configuration.
   [testng] [2024-12-29 02:08:30,594] [pool-1-thread-3] Initializing /data/venu/060310/Visible parts of Fluorescence 380nm1_test1.tif: 
   [testng] 02:08:30,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:08:30,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:08:30,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-29_02-08-30.log]
   [testng] 02:08:30,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6599a867 - End of configuration.
   [testng] [2024-12-29 02:08:35,033] [pool-1-thread-2] Initializing /data/venu/060310/Fluorescence 340nm1_test 1.tif: 
   [testng] 02:08:35,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:08:35,034 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:08:35,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-29_02-08-35.log]
   [testng] 02:08:35,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@158ecf1a - End of configuration.
   [testng] [2024-12-29 02:08:58,996] [pool-1-thread-6] Initializing /data/venu/060310/drug addition protocol testing_Wrkspc3.vws: 
   [testng] [2024-12-29 02:09:05,304] [pool-1-thread-5] Initializing /data/venu/061410/Rat LD muscle fibers Wrkspc3.vws: 
   [testng] [2024-12-29 02:09:07,211] [pool-1-thread-3] Initializing /data/christian/080807ionophore/080807ionophore3.vws: 
   [testng] [2024-12-29 02:09:09,133] [pool-1-thread-2] Initializing /data/christian/080807epi/080807epi2.vws: 
   [testng] [2024-12-29 02:09:50,235] [pool-1-thread-3] Initializing /data/imagesc-84715/not working.vws: 
   [testng] [2024-12-29 02:09:51,741] [pool-1-thread-1] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc2.vws: 
   [testng] [2024-12-29 02:09:53,142] [pool-1-thread-9] Initializing /data/venu/060310/060310_glass_Wrkspc1.vws: 
   [testng] [2024-12-29 02:09:55,731] [pool-1-thread-7] Initializing /data/qinghai/TillvisIOn Sample Dataset/Bgr.vws: 
   [testng] [2024-12-29 02:09:56,894] [pool-1-thread-2] Initializing /data/venu/060310/1_glass bottom dish snapshot.tif: 
   [testng] [2024-12-29 02:10:01,436] [pool-1-thread-12] Initializing /data/andreas/090812E4.vws: 
   [testng] [2024-12-29 02:10:04,860] [pool-1-thread-4] Initializing /data/oliver/TillVision-Data-2-from-Oliver-Mueller-Homburg-Germany/2006 DG2 V1 Indo-1 Ratte.vws: 
   [testng] [2024-12-29 02:10:15,071] [pool-1-thread-11] Initializing /data/samples/fibre.vws: 
   [testng] [2024-12-29 02:10:26,955] [pool-1-thread-2] Initializing /data/ian/non_working_tillvision_vws/20120404.vws: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1325, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 24 minutes 35 seconds
Finished: SUCCESS